RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 VTA1Q9NP79 307 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 PXMP2Q9NR77 195 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 PDRG1Q9NUG6 133 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 NID2Q14112 1375 aa12.89□□□□□ -0.35
VRK3-210ENST00000596121 ALPK3Q96L96 1907 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 LOC102724159A0A0B4J2E5 919 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 GCOM1H8Y6P7 765 aaPredicted RBP12.88□□□□□ -0.35
VRK3-210ENST00000596121 ADAMTS3O15072 1205 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 RGS20O76081 388 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 ARIH2O95376 493 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 POLR2MP0CAP2 368 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 METAP2P50579 478 aaKnown RBP eCLIP12.88□□□□□ -0.35
VRK3-210ENST00000596121 GJA9P57773 515 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 ANAPC15P60006 121 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 CCT2P78371 535 aaKnown RBP12.88□□□□□ -0.35
VRK3-210ENST00000596121 TNFAIP2Q03169 654 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 PDE4DQ08499 809 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 PWP2Q15269 919 aaKnown RBP12.88□□□□□ -0.35
VRK3-210ENST00000596121 PKN1Q16512 942 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 LRRC26Q2I0M4 334 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 FCHSD1Q86WN1 690 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 NSUN6Q8TEA1 469 aaKnown RBP12.88□□□□□ -0.35
VRK3-210ENST00000596121 FERMT2Q96AC1 680 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 SENP6Q9GZR1 1112 aaPredicted RBP12.88□□□□□ -0.35
VRK3-210ENST00000596121 PHF24Q9UPV7 400 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 DNAH12Q6ZR08 3092 aa12.88□□□□□ -0.35
VRK3-210ENST00000596121 H0YGN5 161 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 DTNBO60941 627 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 NR3C2P08235 984 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 NKX3-2P78367 333 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 BEX3Q00994 111 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 ARHGEF16Q5VV41 709 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 IQSEC1Q6DN90 963 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 HEATR3Q7Z4Q2 680 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 DPF3Q92784 378 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 COPS5Q92905 334 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 PHKBQ93100 1093 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 KIF2CQ99661 725 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 PDCD2LQ9BRP1 358 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 WDR11Q9BZH6 1224 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 ALDH8A1Q9H2A2 487 aaPredicted RBP12.87□□□□□ -0.35
VRK3-210ENST00000596121 MAP3K20Q9NYL2 800 aaKnown RBP12.87□□□□□ -0.35
VRK3-210ENST00000596121 SEC63Q9UGP8 760 aaKnown RBP12.87□□□□□ -0.35
VRK3-210ENST00000596121 TPCN1Q9ULQ1 816 aa12.87□□□□□ -0.35
VRK3-210ENST00000596121 STXBP3O00186 592 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 DYNC1LI2O43237 492 aaPredicted RBP12.86□□□□□ -0.35
VRK3-210ENST00000596121 ATN1P54259 1190 aaPredicted RBP12.86□□□□□ -0.35
VRK3-210ENST00000596121 AK2P54819 239 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 TRAF1Q13077 416 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 PGM5Q15124 567 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 PPP2R5BQ15173 497 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 KCNA10Q16322 511 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 UBE2SQ16763 222 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 DUSP28Q4G0W2 176 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 CCDC62Q6P9F0 684 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 RNF180Q86T96 592 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 VSIG10LQ86VR7 867 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 SAMD3Q8N6K7 520 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 ZNF274Q96GC6 653 aaPredicted RBP12.86□□□□□ -0.35
VRK3-210ENST00000596121 IWS1Q96ST2 819 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 HTATIP2Q9BUP3 242 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 PSTPIP2Q9H939 334 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 GTF3C3Q9Y5Q9 886 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 FRMPD4Q14CM0 1322 aa12.86□□□□□ -0.35
VRK3-210ENST00000596121 KBTBD13C9JR72 458 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 PIK3CDO00329 1044 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 PRPF3O43395 683 aaKnown RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 C6orf222P0C671 652 aaPredicted RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 MYCLP12524 364 aaPredicted RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 CST5P28325 142 aaPredicted RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 ACLYP53396 1101 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 MRPS9P82933 396 aaKnown RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 STK3Q13188 491 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 STXBP2Q15833 593 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 PFKFB3Q16875 520 aaPredicted RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 SEPT14Q6ZU15 432 aa12.85□□□□□ -0.35
VRK3-210ENST00000596121 NOL8Q76FK4 1167 aaKnown RBP12.85□□□□□ -0.35
VRK3-210ENST00000596121 CCDC196A0A1B0GTZ2 297 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 A0A1W2PQ45 241 aaPredicted RBP12.84□□□□□ -0.35
VRK3-210ENST00000596121 A0A1W2PQY0 241 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 EIF3JO75822 258 aaKnown RBP12.84□□□□□ -0.35
VRK3-210ENST00000596121 LARGE1O95461 756 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 ASGR1P07306 291 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 IFNAR1P17181 557 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 LY6KQ17RY6 165 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 GNASQ5JWF2 1037 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 SLC39A5Q6ZMH5 540 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 TLK2Q86UE8 772 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 C7orf61Q8IZ16 206 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 SCFD2Q8WU76 684 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 TSEN34Q9BSV6 310 aaKnown RBP12.84□□□□□ -0.35
VRK3-210ENST00000596121 BCAS3Q9H6U6 928 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 TMEM260Q9NX78 707 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 BARHL2Q9NY43 387 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 Q9Y3F1 56 aa12.84□□□□□ -0.35
VRK3-210ENST00000596121 EVI5O60447 810 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 TXNP10599 105 aaKnown RBP12.83□□□□□ -0.36
VRK3-210ENST00000596121 SCG2P13521 617 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 NEK4P51957 841 aa12.83□□□□□ -0.36
VRK3-210ENST00000596121 NAPAP54920 295 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms