RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PNMA2Q9UL42 364 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 BDP1A6H8Y1 2624 aa11.74□□□□□ -0.53
LIG1-209ENST00000596104 A0A0D9SFI3 127 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 ARIH2O95376 493 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 ZMYM6O95789 1325 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 GPNMBQ14956 572 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 AAK1Q2M2I8 961 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 BRDTQ58F21 947 aaPredicted RBP11.73□□□□□ -0.53
LIG1-209ENST00000596104 KRT40Q6A162 431 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 CCDC62Q6P9F0 684 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 HERC6Q8IVU3 1022 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 RAD50Q92878 1312 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 CTAGE1Q96RT6 745 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 CERS4Q9HA82 394 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 TOMM22Q9NS69 142 aa11.73□□□□□ -0.53
LIG1-209ENST00000596104 GTPBP6O43824 516 aaPredicted RBP11.72□□□□□ -0.53
LIG1-209ENST00000596104 TXNP10599 105 aaKnown RBP11.72□□□□□ -0.53
LIG1-209ENST00000596104 HSPD1P10809 573 aaKnown RBP11.72□□□□□ -0.53
LIG1-209ENST00000596104 PDE1AP54750 535 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 BFSP2Q13515 415 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 SKIV2LQ15477 1246 aaKnown RBP11.72□□□□□ -0.53
LIG1-209ENST00000596104 SPRED2Q7Z698 418 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 ZNF589Q86UQ0 364 aaPredicted RBP11.72□□□□□ -0.53
LIG1-209ENST00000596104 RETREG2Q8NC44 543 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 RGS22Q8NE09 1264 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 ARNTL2Q8WYA1 636 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 TTC14Q96N46 770 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 SCN10AQ9Y5Y9 1956 aa11.72□□□□□ -0.53
LIG1-209ENST00000596104 LPXNO60711 386 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 BAIAP3O94812 1187 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 PCP11498 1178 aaKnown RBP11.71□□□□□ -0.53
LIG1-209ENST00000596104 HAND2P61296 217 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 MCMDC2Q4G0Z9 681 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 SESTD1Q86VW0 696 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 TICAM2Q86XR7 235 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 TBC1D10CQ8IV04 446 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 AFG1LQ8WV93 481 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 DHX38Q92620 1227 aaKnown RBP11.71□□□□□ -0.53
LIG1-209ENST00000596104 KAT2BQ92831 832 aa11.71□□□□□ -0.53
LIG1-209ENST00000596104 MPHOSPH6Q99547 160 aaKnown RBP11.71□□□□□ -0.53
LIG1-209ENST00000596104 FTOQ9C0B1 505 aaKnown RBP eCLIP11.71□□□□□ -0.53
LIG1-209ENST00000596104 PRRC2BQ5JSZ5 2229 aaKnown RBP11.71□□□□□ -0.54
LIG1-209ENST00000596104 GBF1Q92538 1859 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 KIF28PB7ZC32 967 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 TLL1O43897 1013 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 MMP3P08254 477 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 PLA2G5P39877 138 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 ARHGAP1Q07960 439 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 RBL2Q08999 1139 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 NMIQ13287 307 aaPredicted RBP11.7□□□□□ -0.54
LIG1-209ENST00000596104 GRB10Q13322 594 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 PTGISQ16647 500 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 USH1GQ495M9 461 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 GPATCH4Q5T3I0 446 aaKnown RBP11.7□□□□□ -0.54
LIG1-209ENST00000596104 ANKRD45Q5TZF3 282 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 GDF6Q6KF10 455 aaPredicted RBP11.7□□□□□ -0.54
LIG1-209ENST00000596104 CAGE1Q8TC20 777 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 SYTL5Q8TDW5 730 aaPredicted RBP11.7□□□□□ -0.54
LIG1-209ENST00000596104 AFAP1L1Q8TED9 768 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 TBC1D5Q92609 795 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 C1QTNF1Q9BXJ1 281 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 UBA5Q9GZZ9 404 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 MAF1Q9H063 256 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 CPVLQ9H3G5 476 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 COL20A1Q9P218 1284 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 COG5Q9UP83 839 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 NOD1Q9Y239 953 aa11.7□□□□□ -0.54
LIG1-209ENST00000596104 NEDD4P46934 1319 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 CCDC171Q6TFL3 1326 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 TRANK1O15050 2925 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 LCHNA4D1U4 455 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 B4DLN1 442 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 GH1P01241 217 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 GOLGA8HP0CJ92 632 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 MRPL12P52815 198 aaKnown RBP11.69□□□□□ -0.54
LIG1-209ENST00000596104 WDR5P61964 334 aaKnown RBP11.69□□□□□ -0.54
LIG1-209ENST00000596104 LY6KQ17RY6 165 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 MFSD6Q6ZSS7 791 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 TAAR1Q96RJ0 339 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 REV3LO60673 3130 aa11.69□□□□□ -0.54
LIG1-209ENST00000596104 XIRP2A4UGR9 3374 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 NBNO60934 754 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 CXCL10P02778 98 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 SELPP16109 830 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 KCNJ6P48051 423 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 CHMP4BP1P59074 171 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 DEFB103AP81534 67 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 CDC37Q16543 378 aaPredicted RBP11.68□□□□□ -0.54
LIG1-209ENST00000596104 TCTN1Q2MV58 587 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 TRAF7Q6Q0C0 670 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 SEPT14Q6ZU15 432 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 LRRC8DQ7L1W4 858 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 TMCO2Q7Z6W1 182 aaPredicted RBP11.68□□□□□ -0.54
LIG1-209ENST00000596104 DGKHQ86XP1 1220 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 CCDC155Q8N6L0 562 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 NSUN6Q8TEA1 469 aaKnown RBP11.68□□□□□ -0.54
LIG1-209ENST00000596104 ESR2Q92731 530 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 HLA-CQ95604 372 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 ZKSCAN3Q9BRR0 538 aa11.68□□□□□ -0.54
LIG1-209ENST00000596104 EPHX3Q9H6B9 360 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms