RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 PDGFCQ9NRA1 345 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 A0A0C4DFX4 3053 aa20.55■□□□□ 0.88
SHKBP1-204ENST00000594862 DCDC2CA8MYV0 355 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 EPB41L2O43491 1005 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 CLTBP09497 229 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 TLE2Q04725 743 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 TTLL4Q14679 1199 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 STXBP2Q15833 593 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 ARHGEF16Q5VV41 709 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 DHX32Q7L7V1 743 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 UBE2OQ9C0C9 1292 aaKnown RBP20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 PRDM5Q9NQX1 630 aaPredicted RBP20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 PDLIM7Q9NR12 457 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 LTBP2Q14767 1821 aa20.54■□□□□ 0.88
SHKBP1-204ENST00000594862 CTAGE5O15320 804 aa20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 DYNC1LI2O43237 492 aaPredicted RBP20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 CYTH3O43739 400 aa20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 PPP1R11O60927 126 aaPredicted RBP20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 VTI1AQ96AJ9 217 aa20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 POLR3EQ9NVU0 708 aa20.53■□□□□ 0.88
SHKBP1-204ENST00000594862 GCOM1H8Y6P7 765 aaPredicted RBP20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 TLR3O15455 904 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 PQBP1O60828 265 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 POLR2MP0CAP2 368 aa20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 TDHQ8IZJ6 230 aa20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 TAAR1Q96RJ0 339 aa20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 MYL10Q9BUA6 226 aa20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 PXMP2Q9NR77 195 aa20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 DDX49Q9Y6V7 483 aaKnown RBP20.52■□□□□ 0.88
SHKBP1-204ENST00000594862 ARVCFO00192 962 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 OPLAHO14841 1288 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 KPNA6O60684 536 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 EIF3JO75822 258 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 RCAN1P53805 252 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 BEX3Q00994 111 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 SLC35G1Q2M3R5 365 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 OR6J1Q8NGC5 347 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 TBC1D5Q92609 795 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 GPHNQ9NQX3 736 aaPredicted RBP20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 RBM28Q9NW13 759 aaKnown RBP20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 COL20A1Q9P218 1284 aa20.51■□□□□ 0.87
SHKBP1-204ENST00000594862 KIAA0355O15063 1070 aa20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 TXNP10599 105 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 HSPA4P34932 840 aa20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 MDM2Q00987 491 aaPredicted RBP20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 EXOSC10Q01780 885 aaKnown RBP20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 KCNV1Q6PIU1 500 aa20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 FANCBQ8NB91 859 aa20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 KCNB2Q92953 911 aa20.5■□□□□ 0.87
SHKBP1-204ENST00000594862 KIAA1217Q5T5P2 1943 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 NR3C2P08235 984 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 EIF2AK2P19525 551 aaKnown RBP20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 CDK7P50613 346 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 FGD1P98174 961 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 APOA5Q6Q788 366 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 CXCL17Q6UXB2 119 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 MICU3Q86XE3 530 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 TEX2Q8IWB9 1127 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 RASEFQ8IZ41 740 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 CUL5Q93034 780 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 TMEM39AQ9NV64 488 aa20.49■□□□□ 0.87
SHKBP1-204ENST00000594862 RAG1P15918 1043 aa20.48■□□□□ 0.87
SHKBP1-204ENST00000594862 PSMA5P28066 241 aa20.48■□□□□ 0.87
SHKBP1-204ENST00000594862 TMTC3Q6ZXV5 915 aa20.48■□□□□ 0.87
SHKBP1-204ENST00000594862 PDCD2LQ9BRP1 358 aa20.48■□□□□ 0.87
SHKBP1-204ENST00000594862 LRRC2Q9BYS8 371 aa20.48■□□□□ 0.87
SHKBP1-204ENST00000594862 A6NJR5 290 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 SOX1O00570 391 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 ZBTB43O43298 467 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 STAM2O75886 525 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 PLEKHA8P1O95397 391 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 GH1P01241 217 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 IRX5P78411 483 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 FAAP100Q0VG06 881 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 ITGA7Q13683 1181 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 ADCK5Q3MIX3 580 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 LRIT3Q3SXY7 679 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 CCDC62Q6P9F0 684 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 BLOC1S2Q6QNY1 142 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 SRBD1Q8N5C6 995 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 SLC43A3Q8NBI5 491 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 MTG1Q9BT17 334 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 DNAH12Q6ZR08 3092 aa20.47■□□□□ 0.87
SHKBP1-204ENST00000594862 BAZ2BQ9UIF8 2168 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 TRIM43BA6NCK2 446 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 PIK3CDO00329 1044 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 CCND2P30279 289 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 HOXA13P31271 388 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 PGM5Q15124 567 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 RTN1Q16799 776 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 SEPT14Q6ZU15 432 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 FAM126BQ8IXS8 530 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 TRIM43Q96BQ3 446 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 JAKMIP1Q96N16 626 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 TBX21Q9UL17 535 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 MRVI1Q9Y6F6 885 aa20.46■□□□□ 0.87
SHKBP1-204ENST00000594862 CCDC196A0A1B0GTZ2 297 aa20.45■□□□□ 0.86
SHKBP1-204ENST00000594862 hCG_1984214I3L0E3 225 aa20.45■□□□□ 0.86
SHKBP1-204ENST00000594862 EIF5BO60841 1220 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-204ENST00000594862 RXRAP19793 462 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms