RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 EDNRBP24530 442 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 CPT1AP50416 773 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 CHMP4BP1P59074 171 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 NBPF20Q3BBV1 942 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 FAM47CQ5HY64 1035 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 GPATCH4Q5T3I0 446 aaKnown RBP14.59□□□□□ -0.07
UPF1-203ENST00000594504 CASC1Q6TDU7 716 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 DEFB128Q7Z7B8 93 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 DNERQ8NFT8 737 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 ZSCAN10Q96SZ4 725 aaPredicted RBP14.59□□□□□ -0.07
UPF1-203ENST00000594504 MTG1Q9BT17 334 aaPredicted RBP14.59□□□□□ -0.07
UPF1-203ENST00000594504 KAT14Q9H8E8 782 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 GPHNQ9NQX3 736 aaPredicted RBP14.59□□□□□ -0.07
UPF1-203ENST00000594504 COL20A1Q9P218 1284 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 MSRAQ9UJ68 235 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 TNKSO95271 1327 aa14.59□□□□□ -0.07
UPF1-203ENST00000594504 LOC102724159A0A0B4J2E5 919 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 CDC45O75419 566 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 ADGRE1Q14246 886 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 PPP2R5BQ15173 497 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 PWP2Q15269 919 aaKnown RBP14.58□□□□□ -0.08
UPF1-203ENST00000594504 CCDC85BQ15834 202 aaPredicted RBP14.58□□□□□ -0.08
UPF1-203ENST00000594504 IMMTQ16891 758 aaKnown RBP14.58□□□□□ -0.08
UPF1-203ENST00000594504 SEPT14Q6ZU15 432 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 IQCA1Q86XH1 822 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 RPUSD2Q8IZ73 545 aaKnown RBP14.58□□□□□ -0.08
UPF1-203ENST00000594504 ENAHQ8N8S7 591 aaPredicted RBP14.58□□□□□ -0.08
UPF1-203ENST00000594504 ANKS1AQ92625 1134 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 ESYT1Q9BSJ8 1104 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 SEZ6LQ9BYH1 1024 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 PNMA2Q9UL42 364 aa14.58□□□□□ -0.08
UPF1-203ENST00000594504 A6NJR5 290 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 ZBBXA8MT70 800 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 TTLL4Q14679 1199 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 LY6KQ17RY6 165 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 QRICH1Q2TAL8 776 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 STAG2Q8N3U4 1231 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 RGS22Q8NE09 1264 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 SYTL5Q8TDW5 730 aaPredicted RBP14.57□□□□□ -0.08
UPF1-203ENST00000594504 SCFD2Q8WU76 684 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 GAS2L1Q99501 681 aaPredicted RBP14.57□□□□□ -0.08
UPF1-203ENST00000594504 MPHOSPH6Q99547 160 aaKnown RBP14.57□□□□□ -0.08
UPF1-203ENST00000594504 SLC4A7Q9Y6M7 1214 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 U3KPZ7 1027 aaPredicted RBP14.57□□□□□ -0.08
UPF1-203ENST00000594504 LAMA4Q16363 1823 aa14.57□□□□□ -0.08
UPF1-203ENST00000594504 NKRFO15226 690 aaKnown RBP eCLIP14.56□□□□□ -0.08
UPF1-203ENST00000594504 DHX16O60231 1041 aaKnown RBP14.56□□□□□ -0.08
UPF1-203ENST00000594504 SUPT20HL2P0C7V6 817 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 IGFBP4P22692 258 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 NT5C2P49902 561 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 PTH1RQ03431 593 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 RAB30Q15771 203 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 CCDC178Q5BJE1 867 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 CHST3Q7LGC8 479 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 AFG1LQ8WV93 481 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 MTIF3Q9H2K0 278 aaKnown RBP14.56□□□□□ -0.08
UPF1-203ENST00000594504 JMJD4Q9H9V9 463 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 SLC28A3Q9HAS3 691 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 ABCB11O95342 1321 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 MYH6P13533 1939 aa14.56□□□□□ -0.08
UPF1-203ENST00000594504 SCN10AQ9Y5Y9 1956 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 B4DLN1 442 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 PARP1P09874 1014 aaKnown RBP14.55□□□□□ -0.08
UPF1-203ENST00000594504 MRPL12P52815 198 aaKnown RBP14.55□□□□□ -0.08
UPF1-203ENST00000594504 ASPRV1Q53RT3 343 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 BRDTQ58F21 947 aaPredicted RBP14.55□□□□□ -0.08
UPF1-203ENST00000594504 CCDC62Q6P9F0 684 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 CYB5R4Q7L1T6 521 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 FBXO11Q86XK2 927 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 MAP4K1Q92918 833 aa14.55□□□□□ -0.08
UPF1-203ENST00000594504 RFXAPO00287 272 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 CFBP00751 764 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 IQCF3P0C7M6 154 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 EIF2AK2P19525 551 aaKnown RBP14.54□□□□□ -0.08
UPF1-203ENST00000594504 NFRKBQ6P4R8 1299 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 NSUN6Q8TEA1 469 aaKnown RBP14.54□□□□□ -0.08
UPF1-203ENST00000594504 ZFP91Q96JP5 570 aaPredicted RBP14.54□□□□□ -0.08
UPF1-203ENST00000594504 RMDN3Q96TC7 470 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 KRT23Q9C075 422 aa14.54□□□□□ -0.08
UPF1-203ENST00000594504 LSG1Q9H089 658 aaKnown RBP14.54□□□□□ -0.08
UPF1-203ENST00000594504 TRIP12Q14669 1992 aaPredicted RBP14.54□□□□□ -0.08
UPF1-203ENST00000594504 LAMA2P24043 3122 aaKnown RBP14.53□□□□□ -0.08
UPF1-203ENST00000594504 MYH7BA7E2Y1 1941 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 KIAA1217Q5T5P2 1943 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 OPLAHO14841 1288 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 SORBS3O60504 671 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 KPNA6O60684 536 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 PPP1R11O60927 126 aaPredicted RBP14.53□□□□□ -0.08
UPF1-203ENST00000594504 GH1P01241 217 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 MMP3P08254 477 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 ATP2A2P16615 1042 aaKnown RBP14.53□□□□□ -0.08
UPF1-203ENST00000594504 ARHGAP1Q07960 439 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 SEC23AQ15436 765 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 STXBP2Q15833 593 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 IFIT1BQ5T764 474 aaKnown RBP14.53□□□□□ -0.08
UPF1-203ENST00000594504 ARHGEF16Q5VV41 709 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 MCF2L2Q86YR7 1114 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 RETREG2Q8NC44 543 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 KAT2BQ92831 832 aa14.53□□□□□ -0.08
UPF1-203ENST00000594504 UBAC1Q9BSL1 405 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms