RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 MTMR8Q96EF0 704 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 FGD4Q96M96 766 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 KATNBL1Q9H079 304 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 PRDM12Q9H4Q4 367 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 RIOX1Q9H6W3 641 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 TBX21Q9UL17 535 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 XIRP2A4UGR9 3374 aa12.2□□□□□ -0.46
LIG3-212ENST00000590181 COL4A4P53420 1690 aaPredicted RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 TANC1Q9C0D5 1861 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 MYADML2A6NDP7 307 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 DHX16O60231 1041 aaKnown RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 CDC45O75419 566 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 TIMP1P01033 207 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 C6orf222P0C671 652 aaPredicted RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 PBX2P40425 430 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 ALDH5A1P51649 535 aaPredicted RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 PDE4DQ08499 809 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 TROAPQ12815 778 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 GRM4Q14833 912 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 PPP2R5BQ15173 497 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 DUSP28Q4G0W2 176 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 TMEM67Q5HYA8 995 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 GNASQ5JWF2 1037 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 KCNV1Q6PIU1 500 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 IGDCC4Q8TDY8 1250 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 ADAMTS19Q8TE59 1207 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 SCFD2Q8WU76 684 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 PBX4Q9BYU1 374 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 LSG1Q9H089 658 aaKnown RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 IL25Q9H293 177 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 JMJD4Q9H9V9 463 aa12.19□□□□□ -0.46
LIG3-212ENST00000590181 GNEQ9Y223 722 aaKnown RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 TCF20Q9UGU0 1960 aaKnown RBP12.19□□□□□ -0.46
LIG3-212ENST00000590181 PNMA6FA0A0J9YX94 578 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 GOLGA8HP0CJ92 632 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 EDNRBP24530 442 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 CPT1AP50416 773 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 KCNA10Q16322 511 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 MFSD5Q6N075 450 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 PSRC1Q6PGN9 363 aaPredicted RBP12.18□□□□□ -0.46
LIG3-212ENST00000590181 SYNE3Q6ZMZ3 975 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 NOL8Q76FK4 1167 aaKnown RBP12.18□□□□□ -0.46
LIG3-212ENST00000590181 CYB5R4Q7L1T6 521 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 MB21D2Q8IYB1 491 aaPredicted RBP12.18□□□□□ -0.46
LIG3-212ENST00000590181 IL27Q8NEV9 243 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 CTCFLQ8NI51 663 aaPredicted RBP12.18□□□□□ -0.46
LIG3-212ENST00000590181 ATXN2LQ8WWM7 1075 aaKnown RBP12.18□□□□□ -0.46
LIG3-212ENST00000590181 UBA5Q9GZZ9 404 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 ANO2Q9NQ90 1003 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 POLR3EQ9NVU0 708 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 MAD2L2Q9UI95 211 aa12.18□□□□□ -0.46
LIG3-212ENST00000590181 LCTP09848 1927 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 A0A0U1RQG5 324 aaPredicted RBP12.17□□□□□ -0.46
LIG3-212ENST00000590181 GRXCR1A8MXD5 290 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 NFIBO00712 420 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 TLR3O15455 904 aaKnown RBP12.17□□□□□ -0.46
LIG3-212ENST00000590181 EIF3JO75822 258 aaKnown RBP12.17□□□□□ -0.46
LIG3-212ENST00000590181 STAM2O75886 525 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 REC8O95072 547 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 TGFB3P10600 412 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 CALML3P27482 149 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 RCAN1P53805 252 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 TTLL4Q14679 1199 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 STXBP2Q15833 593 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 FSCN1Q16658 493 aaKnown RBP12.17□□□□□ -0.46
LIG3-212ENST00000590181 QRICH1Q2TAL8 776 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 TMEM240Q5SV17 173 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 RASIP1Q5U651 963 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 TAPT1Q6NXT6 567 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 ASB2Q96Q27 587 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 UHRF1Q96T88 793 aaPredicted RBP12.17□□□□□ -0.46
LIG3-212ENST00000590181 SPZ1Q9BXG8 430 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 PPP1R12CQ9BZL4 782 aa12.17□□□□□ -0.46
LIG3-212ENST00000590181 CCDC69A6NI79 296 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 ARVCFO00192 962 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 SLC27A2O14975 620 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 ADCY6O43306 1168 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 ASGR1P07306 291 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 ACRP10323 421 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 CSF2RAP15509 400 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 CDK7P50613 346 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 HSD17B4P51659 736 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 SNAP25P60880 206 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 RAB30Q15771 203 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 CCDC85BQ15834 202 aaPredicted RBP12.16□□□□□ -0.46
LIG3-212ENST00000590181 USH1GQ495M9 461 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 CREB3L3Q68CJ9 461 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 STOX1Q6ZVD7 989 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 TLK2Q86UE8 772 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 SGMS1Q86VZ5 419 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 TMEM199Q8N511 208 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 RMDN3Q96TC7 470 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 WDR11Q9BZH6 1224 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 PCDHA1Q9Y5I3 950 aa12.16□□□□□ -0.46
LIG3-212ENST00000590181 BAZ2BQ9UIF8 2168 aaKnown RBP12.15□□□□□ -0.46
LIG3-212ENST00000590181 PRC1O43663 620 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 SUPT20HL2P0C7V6 817 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 IGFBP4P22692 258 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 PLA2G5P39877 138 aa12.15□□□□□ -0.46
LIG3-212ENST00000590181 IRX5P78411 483 aaPredicted RBP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms