RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 PPP4R3BQ5MIZ7 849 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 COPS5Q92905 334 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 SEC62Q99442 399 aaKnown RBP13.07□□□□□ -0.32
VPS4B-202ENST00000588059 NAPBQ9H115 298 aa13.07□□□□□ -0.32
VPS4B-202ENST00000588059 UBE2ZQ9H832 354 aaPredicted RBP13.07□□□□□ -0.32
VPS4B-202ENST00000588059 PTPDC1A2A3K4 754 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 NKRFO15226 690 aaKnown RBP eCLIP13.06□□□□□ -0.32
VPS4B-202ENST00000588059 KPNA6O60684 536 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 EDNRBP24530 442 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 SLC16A2P36021 539 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 DEFB103AP81534 67 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 CCDC96Q2M329 555 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 LRRFIP1Q32MZ4 808 aaKnown RBP13.06□□□□□ -0.32
VPS4B-202ENST00000588059 TTBK2Q6IQ55 1244 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 BTNL9Q6UXG8 535 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 AFAP1L1Q8TED9 768 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 SCFD2Q8WU76 684 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 DCAF4Q8WV16 495 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 CLEC4DQ8WXI8 215 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 RCAN3Q9UKA8 241 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 MTMR7Q9Y216 660 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 NOD1Q9Y239 953 aa13.06□□□□□ -0.32
VPS4B-202ENST00000588059 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.05□□□□□ -0.32
VPS4B-202ENST00000588059 TSPY2A6NKD2 308 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 PRR33A8MZF0 331 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 FOXP2O15409 715 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 CALML3P27482 149 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 NOVP48745 357 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 PDE4DQ08499 809 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 PTGISQ16647 500 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 TCTN1Q2MV58 587 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 SYDE2Q5VT97 1194 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 ALYREFQ86V81 257 aaKnown RBP13.05□□□□□ -0.32
VPS4B-202ENST00000588059 FAM178BQ8IXR5 827 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 CCDC155Q8N6L0 562 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 CAGE1Q8TC20 777 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 DHX38Q92620 1227 aaKnown RBP13.05□□□□□ -0.32
VPS4B-202ENST00000588059 GPATCH3Q96I76 525 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 ZBED2Q9BTP6 218 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 SUGCTQ9HAC7 445 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 INCENPQ9NQS7 918 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 MTUS1Q9ULD2 1270 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 KIAA1217Q5T5P2 1943 aa13.05□□□□□ -0.32
VPS4B-202ENST00000588059 LINC01553A4QN01 128 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 ARIH2O95376 493 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 GJB5O95377 273 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 CXCL10P02778 98 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 SELPP16109 830 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 CHMP4BP1P59074 171 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 ERVK-21P61565 698 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 RPS6P62753 249 aaKnown RBP13.04□□□□□ -0.32
VPS4B-202ENST00000588059 CTDSPL2Q05D32 466 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 LEXMQ3ZCV2 418 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 GDF6Q6KF10 455 aaPredicted RBP13.04□□□□□ -0.32
VPS4B-202ENST00000588059 CNKSR3Q6P9H4 555 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 RNF207Q6ZRF8 634 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 LRRC8DQ7L1W4 858 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 GJD3Q8N144 294 aa13.04□□□□□ -0.32
VPS4B-202ENST00000588059 TGS1Q96RS0 853 aaKnown RBP13.04□□□□□ -0.32
VPS4B-202ENST00000588059 MICAL3Q7RTP6 2002 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 NBNO60934 754 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 TXNP10599 105 aaKnown RBP13.03□□□□□ -0.32
VPS4B-202ENST00000588059 IL9P15248 144 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 KCNA5P22460 613 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 RBL2Q08999 1139 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 ZMYM1Q5SVZ6 1142 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 SESTD1Q86VW0 696 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 DNERQ8NFT8 737 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.03□□□□□ -0.32
VPS4B-202ENST00000588059 YTHDC1Q96MU7 727 aaKnown RBP13.03□□□□□ -0.32
VPS4B-202ENST00000588059 RAD9AQ99638 391 aa13.03□□□□□ -0.32
VPS4B-202ENST00000588059 CHMP4BQ9H444 224 aaKnown RBP13.03□□□□□ -0.32
VPS4B-202ENST00000588059 FRMPD2Q68DX3 1309 aaPredicted RBP13.03□□□□□ -0.32
VPS4B-202ENST00000588059 RBAK-RBAKDNI3L0D1 243 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 RANBP6O60518 1105 aaKnown RBP13.02□□□□□ -0.33
VPS4B-202ENST00000588059 PARNO95453 639 aaKnown RBP13.02□□□□□ -0.33
VPS4B-202ENST00000588059 MMP3P08254 477 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 CCDC62Q6P9F0 684 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 AFG1LQ8WV93 481 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 KAT2BQ92831 832 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 MPHOSPH6Q99547 160 aaKnown RBP13.02□□□□□ -0.33
VPS4B-202ENST00000588059 GPCPD1Q9NPB8 672 aa13.02□□□□□ -0.33
VPS4B-202ENST00000588059 ABHD14A-ACY1A0A1B0GW23 586 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 ORC4O43929 436 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 CKBP12277 381 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 SSTR3P32745 418 aaPredicted RBP13.01□□□□□ -0.33
VPS4B-202ENST00000588059 ARHGAP1Q07960 439 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 PTCRAQ6ISU1 281 aaPredicted RBP13.01□□□□□ -0.33
VPS4B-202ENST00000588059 TMEM47Q9BQJ4 181 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 FSD1Q9BTV5 496 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 ANAPC4Q9UJX5 808 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 WDR19Q8NEZ3 1342 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 NLRC5Q86WI3 1866 aa13.01□□□□□ -0.33
VPS4B-202ENST00000588059 ZNF318Q5VUA4 2279 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 ATG2AQ2TAZ0 1938 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 TTC41PQ6P2S7 1318 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 GRXCR2A6NFK2 248 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 PDHBP11177 359 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 TOP1P11387 765 aaKnown RBP13□□□□□ -0.33
VPS4B-202ENST00000588059 MRE11P49959 708 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms