RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CCDC178Q5BJE1 867 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 ATXN2LQ8WWM7 1075 aaKnown RBP13.92□□□□□ -0.18
LIG3-209ENST00000586435 SCLYQ96I15 445 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 LNPKQ9C0E8 428 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 OSBPL3Q9H4L5 887 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 THEGQ9P2T0 379 aa13.92□□□□□ -0.18
LIG3-209ENST00000586435 ZNF213O14771 459 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 CYP2C9P11712 490 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 SDSP20132 328 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 TTLL4Q14679 1199 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 NBPF20Q3BBV1 942 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 IQCA1Q86XH1 822 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 ANKS1AQ92625 1134 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 RILPL2Q969X0 211 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 PRDM6Q9NQX0 595 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 PTPRSQ13332 1948 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 CHD7Q9P2D1 2997 aa13.91□□□□□ -0.18
LIG3-209ENST00000586435 ABCB11O95342 1321 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 MUC3AQ02505 3323 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 ZBBXA8MT70 800 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 TXNP10599 105 aaKnown RBP13.9□□□□□ -0.18
LIG3-209ENST00000586435 ATP2A2P16615 1042 aaKnown RBP13.9□□□□□ -0.18
LIG3-209ENST00000586435 CDC37Q16543 378 aaPredicted RBP13.9□□□□□ -0.18
LIG3-209ENST00000586435 USH1GQ495M9 461 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 ASPRV1Q53RT3 343 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 PPP2R2DQ66LE6 453 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 PNMA1Q8ND90 353 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 MYH7BA7E2Y1 1941 aa13.9□□□□□ -0.18
LIG3-209ENST00000586435 PRRC2BQ5JSZ5 2229 aaKnown RBP13.89□□□□□ -0.19
LIG3-209ENST00000586435 ARIH2O95376 493 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 GOLGA8HP0CJ92 632 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 ACTN1P12814 892 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 RABGGTBP53611 331 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 FAM47CQ5HY64 1035 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 CCDC62Q6P9F0 684 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 CHD1LQ86WJ1 897 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 PLEKHM2Q8IWE5 1019 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 COPS5Q92905 334 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 SLC9A7Q96T83 725 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 ZKSCAN3Q9BRR0 538 aa13.89□□□□□ -0.19
LIG3-209ENST00000586435 TNFRSF10AO00220 468 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 HIP1O00291 1037 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 KDM4AO75164 1064 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 IQCF3P0C7M6 154 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 IGFBP4P22692 258 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 BFSP2Q13515 415 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 DEFB128Q7Z7B8 93 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 SESTD1Q86VW0 696 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 MCF2L2Q86YR7 1114 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 ADGRF4Q8IZF3 695 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 ENAHQ8N8S7 591 aaPredicted RBP13.88□□□□□ -0.19
LIG3-209ENST00000586435 PHOSPHO2Q8TCD6 241 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 SYTL5Q8TDW5 730 aaPredicted RBP13.88□□□□□ -0.19
LIG3-209ENST00000586435 NSUN6Q8TEA1 469 aaKnown RBP13.88□□□□□ -0.19
LIG3-209ENST00000586435 PPM1EQ8WY54 764 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 ASB2Q96Q27 587 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 IWS1Q96ST2 819 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 DSCC1Q9BVC3 393 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 UBA5Q9GZZ9 404 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 CPVLQ9H3G5 476 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 RWDD1Q9H446 243 aaPredicted RBP13.88□□□□□ -0.19
LIG3-209ENST00000586435 KAT14Q9H8E8 782 aa13.88□□□□□ -0.19
LIG3-209ENST00000586435 GH1P01241 217 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 MMP3P08254 477 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 MYOGP15173 224 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 POU3F3P20264 500 aaPredicted RBP13.87□□□□□ -0.19
LIG3-209ENST00000586435 MRPS5P82675 430 aaKnown RBP13.87□□□□□ -0.19
LIG3-209ENST00000586435 GHRHRQ02643 423 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 NUCB1Q02818 461 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 ARHGAP1Q07960 439 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 QRICH1Q2TAL8 776 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 TMEM67Q5HYA8 995 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 CWC27Q6UX04 472 aaKnown RBP13.87□□□□□ -0.19
LIG3-209ENST00000586435 RETREG2Q8NC44 543 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 CAGE1Q8TC20 777 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 TAAR1Q96RJ0 339 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 ZSCAN10Q96SZ4 725 aaPredicted RBP13.87□□□□□ -0.19
LIG3-209ENST00000586435 DIAPH3Q9NSV4 1193 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 COL20A1Q9P218 1284 aa13.87□□□□□ -0.19
LIG3-209ENST00000586435 MRPL11Q9Y3B7 192 aaKnown RBP13.87□□□□□ -0.19
LIG3-209ENST00000586435 B4E1Z4 1266 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 BAIAP3O94812 1187 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 PARP1P09874 1014 aaKnown RBP13.86□□□□□ -0.19
LIG3-209ENST00000586435 RBL2Q08999 1139 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 STXBP2Q15833 593 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 IMMTQ16891 758 aaKnown RBP13.86□□□□□ -0.19
LIG3-209ENST00000586435 FBXO11Q86XK2 927 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 CCDC155Q8N6L0 562 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 AFAP1L1Q8TED9 768 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 AFG1LQ8WV93 481 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 TBC1D5Q92609 795 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 EMID1Q96A84 441 aaPredicted RBP13.86□□□□□ -0.19
LIG3-209ENST00000586435 CTAGE1Q96RT6 745 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 RMDN3Q96TC7 470 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 KRT23Q9C075 422 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 CNNM2Q9H8M5 875 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 ZSWIM5Q9P217 1185 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 CTNNA3Q9UI47 895 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 NOD1Q9Y239 953 aa13.86□□□□□ -0.19
LIG3-209ENST00000586435 COL4A4P53420 1690 aaPredicted RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms