RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 CFAP100Q494V2 611 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 THAP5Q7Z6K1 395 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 ZBTB46Q86UZ6 589 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 SLFN12Q8IYM2 578 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 BVESQ8NE79 360 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 GSTCDQ8NEC7 633 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 PPP1R13LQ8WUF5 828 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 CYB5D2Q8WUJ1 264 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 JPH3Q8WXH2 748 aaPredicted RBP6.32□□□□□ -1.4
SS18-223ENST00000583595 BRF1Q92994 677 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 MRGPRX3Q96LB0 322 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 ARPC5LQ9BPX5 153 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 CTNND2Q9UQB3 1225 aa6.32□□□□□ -1.4
SS18-223ENST00000583595 BRINP1O60477 761 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 NPTXRO95502 500 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 ASLP04424 464 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 PYGMP11217 842 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 YBX3P16989 372 aaKnown RBP eCLIP6.31□□□□□ -1.4
SS18-223ENST00000583595 FAM102BQ5T8I3 360 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 CDCA2Q69YH5 1023 aaPredicted RBP6.31□□□□□ -1.4
SS18-223ENST00000583595 TICAM2Q86XR7 235 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 CCDC144CPQ8IYA2 1237 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 TCEAL8Q8IYN2 117 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 POU5F2Q8N7G0 328 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 PIWIL2Q8TC59 973 aaKnown RBP6.31□□□□□ -1.4
SS18-223ENST00000583595 USP7Q93009 1102 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 CHMP4CQ96CF2 233 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 CCDC74BQ96LY2 380 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 TTC1Q99614 292 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 PUS7LQ9H0K6 701 aaKnown RBP6.31□□□□□ -1.4
SS18-223ENST00000583595 IP6K2Q9UHH9 426 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 AKT3Q9Y243 479 aa6.31□□□□□ -1.4
SS18-223ENST00000583595 M0R2C6 588 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 NOP56O00567 594 aaKnown RBP6.3□□□□□ -1.4
SS18-223ENST00000583595 CLEC3AO75596 197 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 CD247P20963 164 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 GABREP78334 506 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 TCIRG1Q13488 830 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 BRD3Q15059 726 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 NTRK3Q16288 839 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 SYDE2Q5VT97 1194 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 SPATS2Q86XZ4 545 aaKnown RBP6.3□□□□□ -1.4
SS18-223ENST00000583595 SAMD3Q8N6K7 520 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 ADCY4Q8NFM4 1077 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 BTN2A2Q8WVV5 523 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 MAGEB10Q96LZ2 347 aaPredicted RBP6.3□□□□□ -1.4
SS18-223ENST00000583595 Q96M66 194 aa6.3□□□□□ -1.4
SS18-223ENST00000583595 E2F8A0AVK6 867 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 WASH4PA8MWX3 477 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 EFCAB14O75071 495 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 PPFIA4O75335 1185 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 BPIP17213 487 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 IGFALSP35858 605 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 AFMP43652 599 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 GRB10Q13322 594 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 SAFB2Q14151 953 aaKnown RBP eCLIP6.29□□□□□ -1.4
SS18-223ENST00000583595 HLTFQ14527 1009 aaKnown RBP eCLIP6.29□□□□□ -1.4
SS18-223ENST00000583595 DHX8Q14562 1220 aaKnown RBP6.29□□□□□ -1.4
SS18-223ENST00000583595 RALBP1Q15311 655 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 C4orf46Q504U0 113 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 FYB2Q5VWT5 728 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 UBE2R2Q712K3 238 aaPredicted RBP6.29□□□□□ -1.4
SS18-223ENST00000583595 C11orf96Q7Z7L8 435 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 ZSWIM9Q86XI8 627 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 TPH2Q8IWU9 490 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 NXPE1Q8N323 547 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 MAGEB6Q8N7X4 407 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 WNK4Q96J92 1243 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 ANP32EQ9BTT0 268 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 RHOBTB2Q9BYZ6 727 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 DUSP15Q9H1R2 295 aaPredicted RBP6.29□□□□□ -1.4
SS18-223ENST00000583595 IFT22Q9H7X7 185 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 TRAF6Q9Y4K3 522 aa6.29□□□□□ -1.4
SS18-223ENST00000583595 ASXL2Q76L83 1435 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 TCRBV16S1A1N1A0A5B0 115 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GOLGA6CA6NDK9 693 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GOLGA6BA6NDN3 693 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 PPM1BO75688 479 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 ABLIM3O94929 683 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 KCNH1O95259 989 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GOLGA6DP0CG33 693 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 KCNA6P17658 529 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GDNFP39905 211 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 SCNN1BP51168 640 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 KCNMB1Q16558 191 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 PTPN21Q16825 1174 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GFOD2Q3B7J2 385 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 ANKRD39Q53RE8 183 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 C10orf62Q5T681 223 aaPredicted RBP6.28□□□□□ -1.4
SS18-223ENST00000583595 PIK3R6Q5UE93 754 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 NXNQ6DKJ4 435 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 TMPRSS7Q7RTY8 843 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 TRIM59Q8IWR1 403 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 SVIPQ8NHG7 77 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 PTPRN2Q92932 1015 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 C19orf73Q9NVV2 129 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 GOLGA6AQ9NYA3 693 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 KCNH3Q9ULD8 1083 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 EMC9Q9Y3B6 208 aa6.28□□□□□ -1.4
SS18-223ENST00000583595 PCDHA9Q9Y5H5 950 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms