RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 EBAG9O00559 213 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 CYTH3O43739 400 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 HSF2BPO75031 334 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 HIBADHP31937 336 aaKnown RBP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 CXCR5P32302 372 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 MAN2A1Q16706 1144 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 COBLL1Q53SF7 1204 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 CELF1Q92879 486 aaKnown RBP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 HPS3Q969F9 1004 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 SEMA6BQ9H3T3 888 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 TFCP2L1Q9NZI6 479 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 STX8Q9UNK0 236 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 SIK3Q9Y2K2 1263 aa13.55□□□□□ -0.24
SHMT1-208ENST00000582352 MYH14Q7Z406 1995 aaKnown RBP13.55□□□□□ -0.24
SHMT1-208ENST00000582352 USP17L3A6NCW0 530 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 USP17L4A6NCW7 530 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 LRRC53A6NM62 1247 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 EPHB6O15197 1021 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 LCA5LO95447 670 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 FGFR1OPO95684 399 aaKnown RBP13.54□□□□□ -0.24
SHMT1-208ENST00000582352 TECP42680 631 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 GNGT1P63211 74 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 RRAGAQ7L523 313 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 USP17L1Q7RTZ2 530 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ANKS1AQ92625 1134 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 DYNLL2Q96FJ2 89 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 A0A087WUV0 522 aaPredicted RBP13.54□□□□□ -0.24
SHMT1-208ENST00000582352 NKRFO15226 690 aaKnown RBP eCLIP13.54□□□□□ -0.24
SHMT1-208ENST00000582352 EIF3HO15372 352 aaKnown RBP eCLIP13.54□□□□□ -0.24
SHMT1-208ENST00000582352 MRPS25P82663 173 aaKnown RBP13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ITPK1Q13572 414 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 SLC35G1Q2M3R5 365 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 C12orf60Q5U649 245 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 HAUS3Q68CZ6 603 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 CENPPQ6IPU0 288 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 NEK8Q86SG6 692 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 BCAS4Q8TDM0 211 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 SH3GL2Q99962 352 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 LZTS2Q9BRK4 669 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 MAGEA1P43355 309 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ALS2CLQ60I27 953 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ICE2Q659A1 982 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 SV2BQ7L1I2 683 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 CCDC155Q8N6L0 562 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ZMYND12Q9H0C1 365 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 C6orf50Q9HD87 102 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 SMARCAL1Q9NZC9 954 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 JAG2Q9Y219 1238 aa13.54□□□□□ -0.24
SHMT1-208ENST00000582352 ABCB11O95342 1321 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 COL14A1Q05707 1796 aaKnown RBP13.53□□□□□ -0.24
SHMT1-208ENST00000582352 GNA11P29992 359 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 HSPA2P54652 639 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 NAP1L1P55209 391 aaKnown RBP13.53□□□□□ -0.24
SHMT1-208ENST00000582352 CACNA2D4Q7Z3S7 1137 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 GPIHBP1Q8IV16 184 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 ACSBG1Q96GR2 724 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 CDK5RAP3Q96JB5 506 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 NOX5Q96PH1 765 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 ROBO3Q96MS0 1386 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 NCK2O43639 380 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 CPP00450 1065 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 GOLGA8HP0CJ92 632 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 TNFRSF8P28908 595 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 SPTY2D1Q68D10 685 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-208ENST00000582352 ZNF444Q8N0Y2 327 aaPredicted RBP13.53□□□□□ -0.24
SHMT1-208ENST00000582352 MICALL1Q8N3F8 863 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 CAVIN3Q969G5 261 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 EHD2Q9NZN4 543 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 TSKSQ9UJT2 592 aa13.53□□□□□ -0.24
SHMT1-208ENST00000582352 GRIN2DO15399 1336 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 WNK3Q9BYP7 1800 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 PALM3A6NDB9 673 aaPredicted RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 KLRF2D3W0D1 207 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 EPB41P11171 864 aaKnown RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 SF3B2Q13435 895 aaKnown RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 TDRD12Q587J7 1177 aaKnown RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 SOGA3Q5TF21 947 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 CLEC4GQ6UXB4 293 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 ANKRD13CQ8N6S4 541 aa13.52□□□□□ -0.24
SHMT1-208ENST00000582352 RBM12Q9NTZ6 932 aaKnown RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 SEC63Q9UGP8 760 aaKnown RBP13.52□□□□□ -0.24
SHMT1-208ENST00000582352 SMCO2A6NFE2 343 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 LRRC63Q05C16 580 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 GFPT1Q06210 699 aaPredicted RBP13.52□□□□□ -0.25
SHMT1-208ENST00000582352 CFAP221Q4G0U5 840 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 GLE1Q53GS7 698 aaKnown RBP13.52□□□□□ -0.25
SHMT1-208ENST00000582352 UNC13DQ70J99 1090 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 TSEN2Q8NCE0 465 aaKnown RBP13.52□□□□□ -0.25
SHMT1-208ENST00000582352 TMEM47Q9BQJ4 181 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 MMTAG2Q9BU76 263 aaKnown RBP13.52□□□□□ -0.25
SHMT1-208ENST00000582352 SPZ1Q9BXG8 430 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 TANGO6Q9C0B7 1094 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 RABEP2Q9H5N1 569 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 STK17AQ9UEE5 414 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 FAM169AQ9Y6X4 670 aa13.52□□□□□ -0.25
SHMT1-208ENST00000582352 A6NNZ2 444 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 PJA2O43164 708 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 TXKP42681 527 aa13.51□□□□□ -0.25
SHMT1-208ENST00000582352 GTF2A1P52655 376 aaPredicted RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms