RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 TMCO2Q7Z6W1 182 aaPredicted RBP15.08■□□□□ 0
SS18-219ENST00000581570 FAM178BQ8IXR5 827 aa15.08■□□□□ 0
SS18-219ENST00000581570 CCDC155Q8N6L0 562 aa15.08■□□□□ 0
SS18-219ENST00000581570 AFAP1L1Q8TED9 768 aa15.08■□□□□ 0
SS18-219ENST00000581570 COPS5Q92905 334 aa15.08■□□□□ 0
SS18-219ENST00000581570 SUGCTQ9HAC7 445 aa15.08■□□□□ 0
SS18-219ENST00000581570 TSPY2A6NKD2 308 aa15.07■□□□□ 0
SS18-219ENST00000581570 CALML3P27482 149 aa15.07■□□□□ 0
SS18-219ENST00000581570 PDE4DQ08499 809 aa15.07■□□□□ 0
SS18-219ENST00000581570 GPNMBQ14956 572 aa15.07■□□□□ 0
SS18-219ENST00000581570 PTGISQ16647 500 aa15.07■□□□□ 0
SS18-219ENST00000581570 CCDC96Q2M329 555 aa15.07■□□□□ 0
SS18-219ENST00000581570 LEXMQ3ZCV2 418 aa15.07■□□□□ 0
SS18-219ENST00000581570 RASGRP2Q7LDG7 609 aa15.07■□□□□ 0
SS18-219ENST00000581570 CAGE1Q8TC20 777 aa15.07■□□□□ 0
SS18-219ENST00000581570 SCFD2Q8WU76 684 aa15.07■□□□□ 0
SS18-219ENST00000581570 UIMC1Q96RL1 719 aa15.07■□□□□ 0
SS18-219ENST00000581570 TGS1Q96RS0 853 aaKnown RBP15.07■□□□□ 0
SS18-219ENST00000581570 RAD9AQ99638 391 aa15.07■□□□□ 0
SS18-219ENST00000581570 NAPBQ9H115 298 aa15.07■□□□□ 0
SS18-219ENST00000581570 RANBP17Q9H2T7 1088 aaKnown RBP15.07■□□□□ 0
SS18-219ENST00000581570 MTUS1Q9ULD2 1270 aa15.07■□□□□ 0
SS18-219ENST00000581570 SCN5AQ14524 2016 aa15.07■□□□□ 0
SS18-219ENST00000581570 TRANK1O15050 2925 aa15.06■□□□□ 0
SS18-219ENST00000581570 NMT2O60551 498 aa15.06■□□□□ 0
SS18-219ENST00000581570 KCNA5P22460 613 aa15.06■□□□□ 0
SS18-219ENST00000581570 SSTR3P32745 418 aaPredicted RBP15.06■□□□□ 0
SS18-219ENST00000581570 SLC16A2P36021 539 aa15.06■□□□□ 0
SS18-219ENST00000581570 ERVK-21P61565 698 aa15.06■□□□□ 0
SS18-219ENST00000581570 DEFB103AP81534 67 aa15.06■□□□□ 0
SS18-219ENST00000581570 HNRNPUQ00839 825 aaKnown RBP eCLIP15.06■□□□□ 0
SS18-219ENST00000581570 TTBK2Q6IQ55 1244 aa15.06■□□□□ 0
SS18-219ENST00000581570 CNKSR3Q6P9H4 555 aa15.06■□□□□ 0
SS18-219ENST00000581570 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.06■□□□□ 0
SS18-219ENST00000581570 DCAF4Q8WV16 495 aa15.06■□□□□ 0
SS18-219ENST00000581570 MPHOSPH6Q99547 160 aaKnown RBP15.06■□□□□ 0
SS18-219ENST00000581570 CHMP4BQ9H444 224 aaKnown RBP15.06■□□□□ 0
SS18-219ENST00000581570 IL17RBQ9NRM6 502 aa15.06■□□□□ 0
SS18-219ENST00000581570 MYH7P12883 1935 aa15.05■□□□□ 0
SS18-219ENST00000581570 GJB5O95377 273 aa15.05■□□□□ -0
SS18-219ENST00000581570 PARNO95453 639 aaKnown RBP15.05■□□□□ -0
SS18-219ENST00000581570 TXNP10599 105 aaKnown RBP15.05■□□□□ -0
SS18-219ENST00000581570 ALADP13716 330 aa15.05■□□□□ -0
SS18-219ENST00000581570 IL9P15248 144 aa15.05■□□□□ -0
SS18-219ENST00000581570 SELPP16109 830 aa15.05■□□□□ -0
SS18-219ENST00000581570 CSPP1Q1MSJ5 1256 aa15.05■□□□□ -0
SS18-219ENST00000581570 SYDE2Q5VT97 1194 aa15.05■□□□□ -0
SS18-219ENST00000581570 BTNL9Q6UXG8 535 aa15.05■□□□□ -0
SS18-219ENST00000581570 SLC30A10Q6XR72 485 aa15.05■□□□□ -0
SS18-219ENST00000581570 RNF207Q6ZRF8 634 aa15.05■□□□□ -0
SS18-219ENST00000581570 GPATCH3Q96I76 525 aa15.05■□□□□ -0
SS18-219ENST00000581570 CRBNQ96SW2 442 aa15.05■□□□□ -0
SS18-219ENST00000581570 SEC62Q99442 399 aaKnown RBP15.05■□□□□ -0
SS18-219ENST00000581570 ABHD14A-ACY1A0A1B0GW23 586 aa15.04■□□□□ -0
SS18-219ENST00000581570 LINC01553A4QN01 128 aa15.04■□□□□ -0
SS18-219ENST00000581570 EDNRBP24530 442 aa15.04■□□□□ -0
SS18-219ENST00000581570 MRE11P49959 708 aa15.04■□□□□ -0
SS18-219ENST00000581570 TSHZ3Q63HK5 1081 aa15.04■□□□□ -0
SS18-219ENST00000581570 PTCRAQ6ISU1 281 aaPredicted RBP15.04■□□□□ -0
SS18-219ENST00000581570 GDF6Q6KF10 455 aaPredicted RBP15.04■□□□□ -0
SS18-219ENST00000581570 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
SS18-219ENST00000581570 CLEC4DQ8WXI8 215 aa15.04■□□□□ -0
SS18-219ENST00000581570 CTAGE1Q96RT6 745 aa15.04■□□□□ -0
SS18-219ENST00000581570 INCENPQ9NQS7 918 aa15.04■□□□□ -0
SS18-219ENST00000581570 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.04■□□□□ -0
SS18-219ENST00000581570 B4DLN1 442 aa15.03■□□□□ -0
SS18-219ENST00000581570 RANBP6O60518 1105 aaKnown RBP15.03■□□□□ -0
SS18-219ENST00000581570 NBNO60934 754 aa15.03■□□□□ -0
SS18-219ENST00000581570 CXCL10P02778 98 aa15.03■□□□□ -0
SS18-219ENST00000581570 MRPL12P52815 198 aaKnown RBP15.03■□□□□ -0
SS18-219ENST00000581570 RPS6P62753 249 aaKnown RBP15.03■□□□□ -0
SS18-219ENST00000581570 CTDSPL2Q05D32 466 aa15.03■□□□□ -0
SS18-219ENST00000581570 FAM117BQ6P1L5 589 aa15.03■□□□□ -0
SS18-219ENST00000581570 SESTD1Q86VW0 696 aa15.03■□□□□ -0
SS18-219ENST00000581570 DNERQ8NFT8 737 aa15.03■□□□□ -0
SS18-219ENST00000581570 DHX38Q92620 1227 aaKnown RBP15.03■□□□□ -0
SS18-219ENST00000581570 GPCPD1Q9NPB8 672 aa15.03■□□□□ -0
SS18-219ENST00000581570 SCN10AQ9Y5Y9 1956 aa15.03■□□□□ -0
SS18-219ENST00000581570 GRXCR2A6NFK2 248 aa15.02■□□□□ -0
SS18-219ENST00000581570 EFCAB14O75071 495 aa15.02■□□□□ -0
SS18-219ENST00000581570 ARIH2O95376 493 aa15.02■□□□□ -0
SS18-219ENST00000581570 CKBP12277 381 aa15.02■□□□□ -0
SS18-219ENST00000581570 NOVP48745 357 aa15.02■□□□□ -0
SS18-219ENST00000581570 IKBKEQ14164 716 aa15.02■□□□□ -0
SS18-219ENST00000581570 TCTN1Q2MV58 587 aa15.02■□□□□ -0
SS18-219ENST00000581570 PUS10Q3MIT2 529 aaKnown RBP15.02■□□□□ -0
SS18-219ENST00000581570 AFG1LQ8WV93 481 aa15.02■□□□□ -0
SS18-219ENST00000581570 PNMA2Q9UL42 364 aa15.02■□□□□ -0
SS18-219ENST00000581570 FRMPD2Q68DX3 1309 aaPredicted RBP15.01□□□□□ -0.01
SS18-219ENST00000581570 NHLH1Q02575 133 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 RBL2Q08999 1139 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 CCDC62Q6P9F0 684 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 FBXO22Q8NEZ5 403 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 KAT2BQ92831 832 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 TET1Q8NFU7 2136 aa15.01□□□□□ -0.01
SS18-219ENST00000581570 COL4A4P53420 1690 aaPredicted RBP15□□□□□ -0.01
SS18-219ENST00000581570 LCTP09848 1927 aa15□□□□□ -0.01
SS18-219ENST00000581570 DCXO43602 365 aa15□□□□□ -0.01
SS18-219ENST00000581570 GH1P01241 217 aa15□□□□□ -0.01
SS18-219ENST00000581570 MMP3P08254 477 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms