RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 PDE4DQ08499 809 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 BRDTQ58F21 947 aaPredicted RBP12.44□□□□□ -0.42
RFFL-209ENST00000581265 OTOP2Q7RTS6 562 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 TBC1D10CQ8IV04 446 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 SCFD2Q8WU76 684 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 ANKS1AQ92625 1134 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 RILPL2Q969X0 211 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 SNX27Q96L92 541 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 MTG1Q9BT17 334 aaPredicted RBP12.44□□□□□ -0.42
RFFL-209ENST00000581265 LCTP09848 1927 aa12.44□□□□□ -0.42
RFFL-209ENST00000581265 FAM86C2PA6NEL3 165 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 ZNF213O14771 459 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 CCDC178Q5BJE1 867 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 PLEKHM2Q8IWE5 1019 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 OR6J1Q8NGC5 347 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 RWDD1Q9H446 243 aaPredicted RBP12.43□□□□□ -0.42
RFFL-209ENST00000581265 GPHNQ9NQX3 736 aaPredicted RBP12.43□□□□□ -0.42
RFFL-209ENST00000581265 TRMT13Q9NUP7 481 aaKnown RBP12.43□□□□□ -0.42
RFFL-209ENST00000581265 SLC4A7Q9Y6M7 1214 aa12.43□□□□□ -0.42
RFFL-209ENST00000581265 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 TNKSO95271 1327 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 GTPBP6O43824 516 aaPredicted RBP12.42□□□□□ -0.42
RFFL-209ENST00000581265 GPR37L1O60883 481 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 PFKMP08237 780 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 MYL3P08590 195 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 GOLGA8HP0CJ92 632 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 TXNP10599 105 aaKnown RBP12.42□□□□□ -0.42
RFFL-209ENST00000581265 CYP2C9P11712 490 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 PTPN11Q06124 597 aaPredicted RBP12.42□□□□□ -0.42
RFFL-209ENST00000581265 PPP2R5BQ15173 497 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 NBPF20Q3BBV1 942 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 B4GALNT3Q6L9W6 998 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 NFRKBQ6P4R8 1299 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 CHD1LQ86WJ1 897 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 IQCA1Q86XH1 822 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 SCLYQ96I15 445 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 ZKSCAN3Q9BRR0 538 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 UBA5Q9GZZ9 404 aa12.42□□□□□ -0.42
RFFL-209ENST00000581265 YBX2Q9Y2T7 364 aaKnown RBP12.42□□□□□ -0.42
RFFL-209ENST00000581265 NEDD4P46934 1319 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 RAD50Q92878 1312 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 KDM4AO75164 1064 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 MRE11P49959 708 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 NUCB1Q02818 461 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 TTLL4Q14679 1199 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 PPP2R2DQ66LE6 453 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 CCDC62Q6P9F0 684 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 CWC27Q6UX04 472 aaKnown RBP12.41□□□□□ -0.42
RFFL-209ENST00000581265 PNMA1Q8ND90 353 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 TBC1D5Q92609 795 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 ZSCAN10Q96SZ4 725 aaPredicted RBP12.41□□□□□ -0.42
RFFL-209ENST00000581265 CPVLQ9H3G5 476 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 ZSWIM5Q9P217 1185 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 PCDHA11Q9Y5I1 949 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 NCOR1O75376 2440 aa12.41□□□□□ -0.42
RFFL-209ENST00000581265 TCF20Q9UGU0 1960 aaKnown RBP12.4□□□□□ -0.42
RFFL-209ENST00000581265 SCN10AQ9Y5Y9 1956 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 HIP1O00291 1037 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 PITPNM1O00562 1244 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 IGHDP01880 384 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 ATP2A2P16615 1042 aaKnown RBP12.4□□□□□ -0.42
RFFL-209ENST00000581265 RFC2P35250 354 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 RABGGTBP53611 331 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 USH1GQ495M9 461 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 ASPRV1Q53RT3 343 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 MCF2L2Q86YR7 1114 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 ADGRF4Q8IZF3 695 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 SYTL5Q8TDW5 730 aaPredicted RBP12.4□□□□□ -0.42
RFFL-209ENST00000581265 NSUN6Q8TEA1 469 aaKnown RBP12.4□□□□□ -0.42
RFFL-209ENST00000581265 COPS5Q92905 334 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 UIMC1Q96RL1 719 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 IWS1Q96ST2 819 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 DSCC1Q9BVC3 393 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 KAT14Q9H8E8 782 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 COG5Q9UP83 839 aa12.4□□□□□ -0.42
RFFL-209ENST00000581265 CHD9Q3L8U1 2897 aa12.4□□□□□ -0.43
RFFL-209ENST00000581265 ABCB11O95342 1321 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 B4E1Z4 1266 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 ARIH2O95376 493 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 IQCF3P0C7M6 154 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 CDC37Q16543 378 aaPredicted RBP12.39□□□□□ -0.43
RFFL-209ENST00000581265 FAM47CQ5HY64 1035 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 DEFB128Q7Z7B8 93 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 ENAHQ8N8S7 591 aaPredicted RBP12.39□□□□□ -0.43
RFFL-209ENST00000581265 RETREG2Q8NC44 543 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 PHOSPHO2Q8TCD6 241 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 TAAR1Q96RJ0 339 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 DIAPH3Q9NSV4 1193 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 CTNNA3Q9UI47 895 aa12.39□□□□□ -0.43
RFFL-209ENST00000581265 ZBBXA8MT70 800 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 GH1P01241 217 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 ACTN1P12814 892 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 MYOGP15173 224 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 BFSP2Q13515 415 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 STXBP2Q15833 593 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 IMMTQ16891 758 aaKnown RBP12.38□□□□□ -0.43
RFFL-209ENST00000581265 CSPP1Q1MSJ5 1256 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 QRICH1Q2TAL8 776 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 SEPT14Q6ZU15 432 aa12.38□□□□□ -0.43
RFFL-209ENST00000581265 SESTD1Q86VW0 696 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms