RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SEMA7AO75326 666 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 MAPKAPK2P49137 400 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 YOD1Q5VVQ6 348 aaPredicted RBP9.64□□□□□ -0.87
SS18-214ENST00000580003 RCBTB1Q8NDN9 531 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 DPF3Q92784 378 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 OSBP2Q969R2 916 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 DNAJC7Q99615 494 aa9.64□□□□□ -0.87
SS18-214ENST00000580003 F8W031 263 aaPredicted RBP9.63□□□□□ -0.87
SS18-214ENST00000580003 ARNTLO00327 626 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 ADCY3O60266 1144 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 C8AP07357 584 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 GLI4P10075 376 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 BMS1Q14692 1282 aaKnown RBP9.63□□□□□ -0.87
SS18-214ENST00000580003 ZC3H14Q6PJT7 736 aaKnown RBP9.63□□□□□ -0.87
SS18-214ENST00000580003 TMC6Q7Z403 805 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 TEX2Q8IWB9 1127 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 SCUBE1Q8IWY4 988 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 NETO2Q8NC67 525 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 MRFAP1L1Q96HT8 127 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 CHAMP1Q96JM3 812 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 ZSWIM4Q9H7M6 989 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 NUDT5Q9UKK9 219 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 PCDHA2Q9Y5H9 948 aa9.63□□□□□ -0.87
SS18-214ENST00000580003 C22orf46C9J442 243 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 BCL6P41182 706 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 PLEKHN1Q494U1 663 aaPredicted RBP9.62□□□□□ -0.87
SS18-214ENST00000580003 WWC2Q6AWC2 1192 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 CEP68Q76N32 757 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 DPH6Q7L8W6 267 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 DCAF4Q8WV16 495 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 LNPKQ9C0E8 428 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 FBLN5Q9UBX5 448 aa9.62□□□□□ -0.87
SS18-214ENST00000580003 CDK11AQ9UQ88 783 aaPredicted RBP9.62□□□□□ -0.87
SS18-214ENST00000580003 TRBV23-1A0A0A0MS06 115 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 ZC3H12DA2A288 527 aaKnown RBP9.61□□□□□ -0.87
SS18-214ENST00000580003 ETV2O00321 342 aaPredicted RBP9.61□□□□□ -0.87
SS18-214ENST00000580003 FAM153BP0C7A2 387 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 LCP1P13796 627 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 GLDCP23378 1020 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 RAP1GAPP47736 663 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 LSAMPQ13449 338 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 LONRF2Q1L5Z9 754 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 PLEKHO2Q8TD55 490 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 TRMT2BQ96GJ1 504 aaKnown RBP9.61□□□□□ -0.87
SS18-214ENST00000580003 PEX11GQ96HA9 241 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 TMEM169Q96HH4 297 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 PHF20Q9BVI0 1012 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 GPR27Q9NS67 375 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 NPFFR2Q9Y5X5 522 aa9.61□□□□□ -0.87
SS18-214ENST00000580003 TCAF2A6NFQ2 919 aa9.6□□□□□ -0.87
SS18-214ENST00000580003 TSPAN15O95858 294 aa9.6□□□□□ -0.87
SS18-214ENST00000580003 DLG4P78352 724 aa9.6□□□□□ -0.87
SS18-214ENST00000580003 ZNF124Q15973 351 aa9.6□□□□□ -0.87
SS18-214ENST00000580003 ZC3H12BQ5HYM0 836 aaKnown RBP9.6□□□□□ -0.87
SS18-214ENST00000580003 RSPO2Q6UXX9 243 aaPredicted RBP9.6□□□□□ -0.87
SS18-214ENST00000580003 SGPP1Q9BX95 441 aa9.6□□□□□ -0.87
SS18-214ENST00000580003 MBD1Q9UIS9 605 aaPredicted RBP9.6□□□□□ -0.87
SS18-214ENST00000580003 COA3Q9Y2R0 106 aaPredicted RBP9.6□□□□□ -0.87
SS18-214ENST00000580003 NTRK1P04629 796 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 FPR2P25090 351 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 RANGAP1P46060 587 aaPredicted RBP9.59□□□□□ -0.87
SS18-214ENST00000580003 SUMO1P63165 101 aaKnown RBP9.59□□□□□ -0.87
SS18-214ENST00000580003 CCDC144BQ3MJ40 725 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 FAM209AQ5JX71 171 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 ATG14Q6ZNE5 492 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 RXFP1Q9HBX9 757 aa9.59□□□□□ -0.87
SS18-214ENST00000580003 BLACEA4D250 179 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 H7BY64 318 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 C1QTNF9P0C862 333 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 MED14OSP0DP75 135 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 PRR5P85299 388 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 NTRK3Q16288 839 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 MROH9Q5TGP6 573 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 DCP2Q8IU60 420 aaKnown RBP9.58□□□□□ -0.88
SS18-214ENST00000580003 ZFYVE21Q9BQ24 234 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 AP5M1Q9H0R1 490 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 CNTD2Q9H8S5 307 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 CLDND1Q9NY35 253 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 USP35Q9P2H5 1018 aa9.58□□□□□ -0.88
SS18-214ENST00000580003 SLC9A5Q14940 896 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 FOXB2Q5VYV0 432 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 NLRP10Q86W26 655 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 RIOX2Q8IUF8 465 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 THAP3Q8WTV1 239 aaPredicted RBP9.57□□□□□ -0.88
SS18-214ENST00000580003 DHRS4Q9BTZ2 278 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 GOLGA2P5Q9HBQ8 144 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 X6R8D5 127 aa9.57□□□□□ -0.88
SS18-214ENST00000580003 ZBTB7AO95365 584 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 ZNF200P98182 395 aaPredicted RBP9.56□□□□□ -0.88
SS18-214ENST00000580003 STYK1Q6J9G0 422 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 KCNT2Q6UVM3 1135 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 LDHDQ86WU2 507 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 ANKLE2Q86XL3 938 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 Q8N1Y9 231 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 ZSWIM2Q8NEG5 633 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 EXOC2Q96KP1 924 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 GCM1Q9NP62 436 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 FBXL7Q9UJT9 491 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 HCFC2Q9Y5Z7 792 aa9.56□□□□□ -0.88
SS18-214ENST00000580003 N4BP3O15049 544 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms