RNA–Protein interactions for RNA: ENST00000579727.5

RARA-209, Transcript of retinoic acid receptor alpha, human

TSL 4

Gene RARA, Length 564 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RARA-209	ENST00000579727	SYNRG	Q9UMZ2	1314 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	GCOM1	H8Y6P7	765 aa	Predicted RBP	18.85	■□□□□ 0.61
RARA-209	ENST00000579727	SOX1	O00570	391 aa	Predicted RBP	18.85	■□□□□ 0.61
RARA-209	ENST00000579727	POLR2M	P0CAP2	368 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	AK2	P54819	239 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	ARHGEF16	Q5VV41	709 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	WWC2	Q6AWC2	1192 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	DNER	Q8NFT8	737 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	MORC4	Q8TE76	937 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	C11orf49	Q9H6J7	331 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	LAMA3	Q16787	3333 aa		18.85	■□□□□ 0.61
RARA-209	ENST00000579727	EDNRB	P24530	442 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	EVC	P57679	992 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	GHRHR	Q02643	423 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	LRRC41	Q15345	812 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	TAPT1	Q6NXT6	567 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	USP17L6P	Q6QN14	398 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	NECAB2	Q7Z6G3	386 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	ZFP91	Q96JP5	570 aa	Predicted RBP	18.84	■□□□□ 0.61
RARA-209	ENST00000579727	VTA1	Q9NP79	307 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	PXMP2	Q9NR77	195 aa		18.84	■□□□□ 0.61
RARA-209	ENST00000579727	KIAA1217	Q5T5P2	1943 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	CCDC196	A0A1B0GTZ2	297 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	MYADML2	A6NDP7	307 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	DTNB	O60941	627 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	TNFAIP2	Q03169	654 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	UBE2S	Q16763	222 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	TYW1B	Q6NUM6	668 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	IL31RA	Q8NI17	732 aa		18.83	■□□□□ 0.6
RARA-209	ENST00000579727	NSUN6	Q8TEA1	469 aa	Known RBP	18.83	■□□□□ 0.6
RARA-209	ENST00000579727	MPHOSPH6	Q99547	160 aa	Known RBP	18.83	■□□□□ 0.6
RARA-209	ENST00000579727	KBTBD13	C9JR72	458 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	ADAMTS4	O75173	837 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	MYCL	P12524	364 aa	Predicted RBP	18.82	■□□□□ 0.6
RARA-209	ENST00000579727	SMPD1	P17405	629 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	NEK4	P51957	841 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	NAPA	P54920	295 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	PPP2R5B	Q15173	497 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	SMARCC2	Q8TAQ2	1214 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	IL17RA	Q96F46	866 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	LRCH3	Q96II8	777 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	SLC26A6	Q9BXS9	759 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	C22orf23	Q9BZE7	217 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	MAF1	Q9H063	256 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	TPCN1	Q9ULQ1	816 aa		18.82	■□□□□ 0.6
RARA-209	ENST00000579727	LOC102724159	A0A0B4J2E5	919 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	STXBP3	O00186	592 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	DNM1L	O00429	736 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	MEIS2	O14770	477 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	DUSP11	O75319	330 aa	Known RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727	C6orf222	P0C671	652 aa	Predicted RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727	CAPN2	P17655	700 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	PWP2	Q15269	919 aa	Known RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727	NTRK3	Q16288	839 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	ARRDC4	Q8NCT1	418 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	CUL5	Q93034	780 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	FERMT2	Q96AC1	680 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	ZNF274	Q96GC6	653 aa	Predicted RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727	PDCD2L	Q9BRP1	358 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	WDR11	Q9BZH6	1224 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	SENP6	Q9GZR1	1112 aa	Predicted RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727	PSTPIP2	Q9H939	334 aa		18.81	■□□□□ 0.6
RARA-209	ENST00000579727	MAP3K20	Q9NYL2	800 aa	Known RBP	18.81	■□□□□ 0.6
RARA-209	ENST00000579727		B4DLN1	442 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	LARGE1	O95461	756 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	NR3C2	P08235	984 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	COL6A1	P12109	1028 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	MRPL12	P52815	198 aa	Known RBP	18.8	■□□□□ 0.6
RARA-209	ENST00000579727	BEX3	Q00994	111 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	PGM5	Q15124	567 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	PFKFB3	Q16875	520 aa	Predicted RBP	18.8	■□□□□ 0.6
RARA-209	ENST00000579727	SEPT14	Q6ZU15	432 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	RNF180	Q86T96	592 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	TLK2	Q86UE8	772 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	HTATIP2	Q9BUP3	242 aa		18.8	■□□□□ 0.6
RARA-209	ENST00000579727	CPLX1	O14810	134 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	ARIH2	O95376	493 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	SCG2	P13521	617 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	IFNAR1	P17181	557 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	ATN1	P54259	1190 aa	Predicted RBP	18.79	■□□□□ 0.6
RARA-209	ENST00000579727	SCRN1	Q12765	414 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	STXBP2	Q15833	593 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	PKN1	Q16512	942 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	IQSEC1	Q6DN90	963 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	SAMD3	Q8N6K7	520 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	COPS5	Q92905	334 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	IWS1	Q96ST2	819 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	KIF2C	Q99661	725 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	18.79	■□□□□ 0.6
RARA-209	ENST00000579727	BARHL2	Q9NY43	387 aa		18.79	■□□□□ 0.6
RARA-209	ENST00000579727	GNE	Q9Y223	722 aa	Known RBP	18.79	■□□□□ 0.6
RARA-209	ENST00000579727	DYNC1LI2	O43237	492 aa	Predicted RBP	18.78	■□□□□ 0.6
RARA-209	ENST00000579727	PRPF3	O43395	683 aa	Known RBP	18.78	■□□□□ 0.6
RARA-209	ENST00000579727	GJA9	P57773	515 aa		18.78	■□□□□ 0.6
RARA-209	ENST00000579727	AKAP17A	Q02040	695 aa	Known RBP	18.78	■□□□□ 0.6
RARA-209	ENST00000579727	ANKRD1	Q15327	319 aa		18.78	■□□□□ 0.6
RARA-209	ENST00000579727	PGBD1	Q96JS3	809 aa		18.78	■□□□□ 0.6
RARA-209	ENST00000579727	RNF26	Q9BY78	433 aa	Predicted RBP	18.78	■□□□□ 0.6
RARA-209	ENST00000579727	UPF3A	Q9H1J1	476 aa	Known RBP	18.78	■□□□□ 0.6
RARA-209	ENST00000579727	SLK	Q9H2G2	1235 aa	Predicted RBP	18.78	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms