RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 DYNC1LI2O43237 492 aaPredicted RBP17.19■□□□□ 0.34
SS18-212ENST00000579061 ZEB2O60315 1214 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 CABYRO75952 493 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 HSPA4P34932 840 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 MAGEA10P43363 369 aaPredicted RBP17.19■□□□□ 0.34
SS18-212ENST00000579061 FSCN1Q16658 493 aaKnown RBP17.19■□□□□ 0.34
SS18-212ENST00000579061 ADCK5Q3MIX3 580 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 SYNE3Q6ZMZ3 975 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 RRP36Q96EU6 259 aaKnown RBP17.19■□□□□ 0.34
SS18-212ENST00000579061 LRRC2Q9BYS8 371 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 LTBP2Q14767 1821 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 MROH7Q68CQ1 1323 aa17.19■□□□□ 0.34
SS18-212ENST00000579061 IRX5P78411 483 aaPredicted RBP17.18■□□□□ 0.34
SS18-212ENST00000579061 TLE2Q04725 743 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 STXBP2Q15833 593 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 ANKRD33Q7Z3H0 272 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 FANCBQ8NB91 859 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 SEZ6LQ9BYH1 1024 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 PDLIM7Q9NR12 457 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 PXMP2Q9NR77 195 aa17.18■□□□□ 0.34
SS18-212ENST00000579061 A0A0U1RQG5 324 aaPredicted RBP17.17■□□□□ 0.34
SS18-212ENST00000579061 GCOM1H8Y6P7 765 aaPredicted RBP17.17■□□□□ 0.34
SS18-212ENST00000579061 POLR2MP0CAP2 368 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 CDK7P50613 346 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 FXR1P51114 621 aaKnown RBP eCLIP17.17■□□□□ 0.34
SS18-212ENST00000579061 BEX3Q00994 111 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 TTLL4Q14679 1199 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 PPP2R5BQ15173 497 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 ARHGEF16Q5VV41 709 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 APOA5Q6Q788 366 aa17.17■□□□□ 0.34
SS18-212ENST00000579061 SRBD1Q8N5C6 995 aaKnown RBP17.17■□□□□ 0.34
SS18-212ENST00000579061 LBHD1Q9BQE6 289 aaPredicted RBP17.17■□□□□ 0.34
SS18-212ENST00000579061 SEC63Q9UGP8 760 aaKnown RBP17.17■□□□□ 0.34
SS18-212ENST00000579061 DCDC2CA8MYV0 355 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 ARVCFO00192 962 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 EIF3JO75822 258 aaKnown RBP17.16■□□□□ 0.34
SS18-212ENST00000579061 PLEKHA8P1O95397 391 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 SLC34A2O95436 690 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 NR3C2P08235 984 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 CLTBP09497 229 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 RXRAP19793 462 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 RCAN1P53805 252 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 TMEM63BQ5T3F8 832 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 CCDC62Q6P9F0 684 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 VTI1AQ96AJ9 217 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 POLR3EQ9NVU0 708 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 RBM28Q9NW13 759 aaKnown RBP17.16■□□□□ 0.34
SS18-212ENST00000579061 SNX14Q9Y5W7 946 aa17.16■□□□□ 0.34
SS18-212ENST00000579061 KIAA0355O15063 1070 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 TXNP10599 105 aaKnown RBP17.15■□□□□ 0.34
SS18-212ENST00000579061 EIF2AK2P19525 551 aaKnown RBP17.15■□□□□ 0.34
SS18-212ENST00000579061 CPT1AP50416 773 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 BRDTQ58F21 947 aaPredicted RBP17.15■□□□□ 0.34
SS18-212ENST00000579061 TMTC3Q6ZXV5 915 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 MICU3Q86XE3 530 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 OR6J1Q8NGC5 347 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 PDCD2LQ9BRP1 358 aa17.15■□□□□ 0.34
SS18-212ENST00000579061 UBE2OQ9C0C9 1292 aaKnown RBP17.15■□□□□ 0.34
SS18-212ENST00000579061 MYH7BA7E2Y1 1941 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 ZBTB43O43298 467 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 PQBP1O60828 265 aaKnown RBP17.14■□□□□ 0.33
SS18-212ENST00000579061 PTGS1P23219 599 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 PSMA5P28066 241 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 HOXA13P31271 388 aaPredicted RBP17.14■□□□□ 0.33
SS18-212ENST00000579061 MDM2Q00987 491 aaPredicted RBP17.14■□□□□ 0.33
SS18-212ENST00000579061 FAAP100Q0VG06 881 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 BLOC1S2Q6QNY1 142 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 CXCL17Q6UXB2 119 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 FBXL16Q8N461 479 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 SLC43A3Q8NBI5 491 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 PIBF1Q8WXW3 757 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 TCEANC2Q96MN5 208 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 JAKMIP1Q96N16 626 aaKnown RBP17.14■□□□□ 0.33
SS18-212ENST00000579061 PRDM5Q9NQX1 630 aaPredicted RBP17.14■□□□□ 0.33
SS18-212ENST00000579061 SCN10AQ9Y5Y9 1956 aa17.14■□□□□ 0.33
SS18-212ENST00000579061 TRIM43BA6NCK2 446 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 A6NJR5 290 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 PIK3CDO00329 1044 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 KPNA6O60684 536 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 ARIH2O95376 493 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 PGM5Q15124 567 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 SEPT14Q6ZU15 432 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 SH3RF1Q7Z6J0 888 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 VSIG10LQ86VR7 867 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 TDHQ8IZJ6 230 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 CUL5Q93034 780 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 TRIM43Q96BQ3 446 aaPredicted RBP17.13■□□□□ 0.33
SS18-212ENST00000579061 TMEM39AQ9NV64 488 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 BRPF3Q9ULD4 1205 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 FRMPD4Q14CM0 1322 aa17.13■□□□□ 0.33
SS18-212ENST00000579061 KLF18A0A0U1RQI7 1052 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 TLR3O15455 904 aaKnown RBP17.12■□□□□ 0.33
SS18-212ENST00000579061 GH1P01241 217 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 FGD1P98174 961 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 ITGA7Q13683 1181 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 RTN1Q16799 776 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 KCNV1Q6PIU1 500 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 RAB11FIP4Q86YS3 637 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 CMTR1Q8N1G2 835 aaKnown RBP17.12■□□□□ 0.33
SS18-212ENST00000579061 COPS5Q92905 334 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms