RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 RPTORQ8N122 1335 aa17.36■□□□□ 0.37
SS18-206ENST00000577572 TBX3O15119 743 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 NEMFO60524 1076 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 CCNT1O60563 726 aaKnown RBP17.35■□□□□ 0.37
SS18-206ENST00000577572 MKRN3Q13064 507 aaKnown RBP17.35■□□□□ 0.37
SS18-206ENST00000577572 PTGDRQ13258 359 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 ZNF174Q15697 407 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 FAM110CQ1W6H9 321 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 NIPA1Q7RTP0 329 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 ABRAQ8N0Z2 381 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 DNERQ8NFT8 737 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 ANP32EQ9BTT0 268 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 FTOQ9C0B1 505 aaKnown RBP eCLIP17.35■□□□□ 0.37
SS18-206ENST00000577572 CYP39A1Q9NYL5 469 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 PCDHA7Q9UN72 937 aa17.35■□□□□ 0.37
SS18-206ENST00000577572 B4DLN1 442 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 STAM2O75886 525 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 ATP2B1P20020 1258 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 CMA1P23946 247 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 HOXA13P31271 388 aaPredicted RBP17.34■□□□□ 0.37
SS18-206ENST00000577572 MCM7P33993 719 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 DEFB115Q30KQ5 88 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 Q4G0T1 1027 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 FCHSD1Q86WN1 690 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 IFNL1Q8IU54 200 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 C4orf32Q8N8J7 132 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 IWS1Q96ST2 819 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 PAGR1Q9BTK6 254 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 A1CFQ9NQ94 594 aaKnown RBP17.34■□□□□ 0.37
SS18-206ENST00000577572 HOMER2Q9NSB8 354 aa17.34■□□□□ 0.37
SS18-206ENST00000577572 FAM237AA0A1B0GTK4 181 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 STRNO43815 780 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 TRAK2O60296 914 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 CYP2C8P10632 490 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 BAATQ14032 418 aaPredicted RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 AXDND1Q5T1B0 1012 aaPredicted RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 PCNX4Q63HM2 1172 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 NSMFQ6X4W1 530 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 NSUN6Q8TEA1 469 aaKnown RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 TBC1D5Q92609 795 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 PGBD1Q96JS3 809 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 AK8Q96MA6 479 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 MTMR9Q96QG7 549 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 MPHOSPH6Q99547 160 aaKnown RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 TXNRD2Q9NNW7 524 aa17.33■□□□□ 0.36
SS18-206ENST00000577572 ADD3Q9UEY8 706 aaKnown RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 DDX25Q9UHL0 483 aaKnown RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 FBXO2Q9UK22 296 aaPredicted RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 DDX49Q9Y6V7 483 aaKnown RBP17.33■□□□□ 0.36
SS18-206ENST00000577572 EDIL3O43854 480 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 OR52Z1P0C646 297 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 BCRP11274 1271 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 ERCC3P19447 782 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 LONP1P36776 959 aaKnown RBP17.32■□□□□ 0.36
SS18-206ENST00000577572 SETQ01105 290 aaPredicted RBP17.32■□□□□ 0.36
SS18-206ENST00000577572 NBR1Q14596 966 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 DTHD1Q6ZMT9 781 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 NCAPG2Q86XI2 1143 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 SLFN12Q8IYM2 578 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 ANKRD35Q8N283 1001 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 FAM20AQ96MK3 541 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 RMDN3Q96TC7 470 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 PYM1Q9BRP8 204 aaKnown RBP17.32■□□□□ 0.36
SS18-206ENST00000577572 RAB34Q9BZG1 259 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 ZFYVE28Q9HCC9 887 aa17.32■□□□□ 0.36
SS18-206ENST00000577572 ADGRA2Q96PE1 1338 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 IGF2BP3O00425 579 aaKnown RBP eCLIP17.31■□□□□ 0.36
SS18-206ENST00000577572 MAFGO15525 162 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 SLC26A4O43511 780 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 FCER1AP12319 257 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 TAL1P17542 331 aaPredicted RBP17.31■□□□□ 0.36
SS18-206ENST00000577572 MAPK4P31152 587 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 ZNF76P36508 570 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 PDIA5Q14554 519 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 KCTD2Q14681 263 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 CALCRLQ16602 461 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 CEP55Q53EZ4 464 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 MRPS27Q92552 414 aaKnown RBP17.31■□□□□ 0.36
SS18-206ENST00000577572 SYAP1Q96A49 352 aaPredicted RBP17.31■□□□□ 0.36
SS18-206ENST00000577572 PDCD2LQ9BRP1 358 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 PXMP2Q9NR77 195 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 STK24Q9Y6E0 443 aa17.31■□□□□ 0.36
SS18-206ENST00000577572 TCHHQ07283 1943 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 MEIS1O00470 390 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 WNT7AO00755 349 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 TLR2O60603 784 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 GADD45BO75293 160 aaPredicted RBP17.3■□□□□ 0.36
SS18-206ENST00000577572 MARCKSP29966 332 aaPredicted RBP17.3■□□□□ 0.36
SS18-206ENST00000577572 MAP2K2P36507 400 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 FXR2P51116 673 aaKnown RBP eCLIP17.3■□□□□ 0.36
SS18-206ENST00000577572 TAF1CQ15572 869 aaPredicted RBP17.3■□□□□ 0.36
SS18-206ENST00000577572 Q3C1V9 767 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 ARHGEF16Q5VV41 709 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 SLC30A10Q6XR72 485 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 CCDC73Q6ZRK6 1079 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 KCNMB3Q9NPA1 279 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 FAM13BQ9NYF5 915 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 COL20A1Q9P218 1284 aa17.3■□□□□ 0.36
SS18-206ENST00000577572 COL11A1P12107 1806 aaPredicted RBP17.3■□□□□ 0.36
SS18-206ENST00000577572 RBBP6Q7Z6E9 1792 aaKnown RBP17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms