RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 SCLYQ96I15 445 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 UBA5Q9GZZ9 404 aa7.9□□□□□ -1.14
VPS53-213ENST00000572334 TRMT13Q9NUP7 481 aaKnown RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 ADD3Q9UEY8 706 aaKnown RBP7.9□□□□□ -1.14
VPS53-213ENST00000572334 BDP1A6H8Y1 2624 aa7.9□□□□□ -1.15
VPS53-213ENST00000572334 PTPDC1A2A3K4 754 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 A6NJR5 290 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 B4E1Z4 1266 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 OPLAHO14841 1288 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 KDM4AO75164 1064 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 CYP2C9P11712 490 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 CALML3P27482 149 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 TTLL4Q14679 1199 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 SLC35G1Q2M3R5 365 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 CCDC62Q6P9F0 684 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 CWC27Q6UX04 472 aaKnown RBP7.89□□□□□ -1.15
VPS53-213ENST00000572334 OTOP2Q7RTS6 562 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 DGKHQ86XP1 1220 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 ENAHQ8N8S7 591 aaPredicted RBP7.89□□□□□ -1.15
VPS53-213ENST00000572334 RGS22Q8NE09 1264 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 DNERQ8NFT8 737 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 OR6J1Q8NGC5 347 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 EXOC6Q8TAG9 804 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 TAAR1Q96RJ0 339 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 SEZ6LQ9BYH1 1024 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 PRDM12Q9H4Q4 367 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 ZSWIM5Q9P217 1185 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 MICAL3Q7RTP6 2002 aa7.89□□□□□ -1.15
VPS53-213ENST00000572334 COL4A4P53420 1690 aaPredicted RBP7.89□□□□□ -1.15
VPS53-213ENST00000572334 KAT6AQ92794 2004 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 TNKSO95271 1327 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 ZNF213O14771 459 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 ZEB2O60315 1214 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 ARHGEF15O94989 841 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 FGBP02675 491 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 MYL3P08590 195 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 MYOGP15173 224 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 PDE4AP27815 886 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 RABGGTBP53611 331 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 ARHGAP1Q07960 439 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 AAMPQ13685 434 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 GPNMBQ14956 572 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 SEC23AQ15436 765 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 CDC37Q16543 378 aaPredicted RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 QRICH1Q2TAL8 776 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 NBPF20Q3BBV1 942 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 USH1GQ495M9 461 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 GPATCH4Q5T3I0 446 aaKnown RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 ADGRF4Q8IZF3 695 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 STAG2Q8N3U4 1231 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 PNMA1Q8ND90 353 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 SYTL5Q8TDW5 730 aaPredicted RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 ESR2Q92731 530 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 KAT2BQ92831 832 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 MTMR8Q96EF0 704 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 MTG1Q9BT17 334 aaPredicted RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 DSCC1Q9BVC3 393 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 NKX2-4Q9H2Z4 354 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 RNF41Q9H4P4 317 aaPredicted RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 JMJD4Q9H9V9 463 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 POLR3EQ9NVU0 708 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 ZBTB47Q9UFB7 747 aaPredicted RBP7.88□□□□□ -1.15
VPS53-213ENST00000572334 ATG2AQ2TAZ0 1938 aa7.88□□□□□ -1.15
VPS53-213ENST00000572334 NKRFO15226 690 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS53-213ENST00000572334 PPP1R11O60927 126 aaPredicted RBP7.87□□□□□ -1.15
VPS53-213ENST00000572334 GSPT1P15170 499 aaKnown RBP7.87□□□□□ -1.15
VPS53-213ENST00000572334 CPT1AP50416 773 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 GHRHRQ02643 423 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 PDE4DQ08499 809 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 PPP2R5BQ15173 497 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 LY6KQ17RY6 165 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 NFRKBQ6P4R8 1299 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 CYB5R4Q7L1T6 521 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 SCFD2Q8WU76 684 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 ZSCAN10Q96SZ4 725 aaPredicted RBP7.87□□□□□ -1.15
VPS53-213ENST00000572334 RWDD1Q9H446 243 aaPredicted RBP7.87□□□□□ -1.15
VPS53-213ENST00000572334 PNMA2Q9UL42 364 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 TAF6LQ9Y6J9 622 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 MYO7AQ13402 2215 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 SIP14410 1827 aa7.87□□□□□ -1.15
VPS53-213ENST00000572334 ABCB11O95342 1321 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 EPOPA6NHQ4 379 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 RGS20O76081 388 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 MMP3P08254 477 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 IQCF3P0C7M6 154 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 TXNP10599 105 aaKnown RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 NT5C2P49902 561 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 MFAP1P55081 439 aaKnown RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 HIC1Q14526 733 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 RAB30Q15771 203 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 TCTN1Q2MV58 587 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 ASPRV1Q53RT3 343 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 GDF6Q6KF10 455 aaPredicted RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 SPRED2Q7Z698 418 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 DEFB128Q7Z7B8 93 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 SESTD1Q86VW0 696 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 RPUSD2Q8IZ73 545 aaKnown RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 AFG1LQ8WV93 481 aa7.86□□□□□ -1.15
VPS53-213ENST00000572334 DHX38Q92620 1227 aaKnown RBP7.86□□□□□ -1.15
VPS53-213ENST00000572334 MAF1Q9H063 256 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms