RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 PTGS1P23219 599 aa23.31■■□□□ 1.32
NUP88-204ENST00000572290 FSCN1Q16658 493 aaKnown RBP23.31■■□□□ 1.32
NUP88-204ENST00000572290 SCFD2Q8WU76 684 aa23.31■■□□□ 1.32
NUP88-204ENST00000572290 JAKMIP1Q96N16 626 aaKnown RBP23.31■■□□□ 1.32
NUP88-204ENST00000572290 GDF15Q99988 308 aa23.31■■□□□ 1.32
NUP88-204ENST00000572290 PRKAG2Q9UGJ0 569 aa23.31■■□□□ 1.32
NUP88-204ENST00000572290 SEC63Q9UGP8 760 aaKnown RBP23.31■■□□□ 1.32
NUP88-204ENST00000572290 ELP1O95163 1332 aa23.31■■□□□ 1.32
NUP88-204ENST00000572290 GCOM1H8Y6P7 765 aaPredicted RBP23.3■■□□□ 1.32
NUP88-204ENST00000572290 EPB41L2O43491 1005 aaKnown RBP23.3■■□□□ 1.32
NUP88-204ENST00000572290 ZEB2O60315 1214 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 POLR2MP0CAP2 368 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 EIF2AK2P19525 551 aaKnown RBP23.3■■□□□ 1.32
NUP88-204ENST00000572290 MAGEA10P43363 369 aaPredicted RBP23.3■■□□□ 1.32
NUP88-204ENST00000572290 TLE2Q04725 743 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 STXBP2Q15833 593 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 APOA5Q6Q788 366 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 CMTR1Q8N1G2 835 aaKnown RBP23.3■■□□□ 1.32
NUP88-204ENST00000572290 VTI1AQ96AJ9 217 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 PXMP2Q9NR77 195 aa23.3■■□□□ 1.32
NUP88-204ENST00000572290 HOXA13P31271 388 aaPredicted RBP23.29■■□□□ 1.32
NUP88-204ENST00000572290 FGD1P98174 961 aa23.29■■□□□ 1.32
NUP88-204ENST00000572290 PPP2R5BQ15173 497 aa23.29■■□□□ 1.32
NUP88-204ENST00000572290 TMTC3Q6ZXV5 915 aa23.29■■□□□ 1.32
NUP88-204ENST00000572290 BRPF3Q9ULD4 1205 aa23.29■■□□□ 1.32
NUP88-204ENST00000572290 ALPK3Q96L96 1907 aa23.29■■□□□ 1.32
NUP88-204ENST00000572290 SMCHD1A6NHR9 2005 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 NKRFO15226 690 aaKnown RBP eCLIP23.28■■□□□ 1.32
NUP88-204ENST00000572290 ZBTB43O43298 467 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 NR3C2P08235 984 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 CPA1P15085 419 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 BMP8BP34820 402 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 BLOC1S2Q6QNY1 142 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 CCDC82Q8N4S0 544 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 PRDM5Q9NQX1 630 aaPredicted RBP23.28■■□□□ 1.32
NUP88-204ENST00000572290 RBM28Q9NW13 759 aaKnown RBP23.28■■□□□ 1.32
NUP88-204ENST00000572290 LRRC37A2A6NM11 1700 aa23.28■■□□□ 1.32
NUP88-204ENST00000572290 LCTP09848 1927 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 KLF18A0A0U1RQI7 1052 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 PQBP1O60828 265 aaKnown RBP23.27■■□□□ 1.32
NUP88-204ENST00000572290 CABYRO75952 493 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 TXNP10599 105 aaKnown RBP23.27■■□□□ 1.32
NUP88-204ENST00000572290 PSMA5P28066 241 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 TTLL4Q14679 1199 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 CXCL17Q6UXB2 119 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 OR6J1Q8NGC5 347 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 LBHD1Q9BQE6 289 aaPredicted RBP23.27■■□□□ 1.32
NUP88-204ENST00000572290 PDCD2LQ9BRP1 358 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 PDLIM7Q9NR12 457 aa23.27■■□□□ 1.32
NUP88-204ENST00000572290 A0A0U1RQG5 324 aaPredicted RBP23.26■■□□□ 1.31
NUP88-204ENST00000572290 A0A1W2PPC1 479 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 EIF3JO75822 258 aaKnown RBP23.26■■□□□ 1.31
NUP88-204ENST00000572290 MDM2Q00987 491 aaPredicted RBP23.26■■□□□ 1.31
NUP88-204ENST00000572290 RTN1Q16799 776 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 SEPT14Q6ZU15 432 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 Q6ZUG5 572 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 ANKRD33Q7Z3H0 272 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 FCHSD1Q86WN1 690 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 TOX2Q96NM4 488 aa23.26■■□□□ 1.31
NUP88-204ENST00000572290 GOLGA8AA7E2F4 631 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 GOLGA8BA8MQT2 603 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 ARIH2O95376 493 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 CLTBP09497 229 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 CPT1AP50416 773 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 COPS5Q92905 334 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 USP26Q9BXU7 913 aa23.25■■□□□ 1.31
NUP88-204ENST00000572290 hCG_1642624A0A1W2PR95 340 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 DCDC2CA8MYV0 355 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 ARVCFO00192 962 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 MYCLP12524 364 aaPredicted RBP23.24■■□□□ 1.31
NUP88-204ENST00000572290 RPS6KB1P23443 525 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 CDK7P50613 346 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 RCAN1P53805 252 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 BRDTQ58F21 947 aaPredicted RBP23.24■■□□□ 1.31
NUP88-204ENST00000572290 CCDC62Q6P9F0 684 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 SH3RF1Q7Z6J0 888 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 CUL5Q93034 780 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 UBE2OQ9C0C9 1292 aaKnown RBP23.24■■□□□ 1.31
NUP88-204ENST00000572290 NAP1L2Q9ULW6 460 aaPredicted RBP23.24■■□□□ 1.31
NUP88-204ENST00000572290 MROH7Q68CQ1 1323 aa23.24■■□□□ 1.31
NUP88-204ENST00000572290 MCM3APO60318 1980 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 TRIM43BA6NCK2 446 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 CASTP20810 708 aaKnown RBP23.23■■□□□ 1.31
NUP88-204ENST00000572290 PGM5Q15124 567 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 VSIG10LQ86VR7 867 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 BRF1Q92994 677 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 TRIM43Q96BQ3 446 aaPredicted RBP23.23■■□□□ 1.31
NUP88-204ENST00000572290 POLR3EQ9NVU0 708 aa23.23■■□□□ 1.31
NUP88-204ENST00000572290 CCND2P30279 289 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 APOBRQ0VD83 1088 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 FAAP100Q0VG06 881 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 LY6KQ17RY6 165 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 FBXL16Q8N461 479 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 IL31RAQ8NI17 732 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 SMARCC2Q8TAQ2 1214 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 TMEM39AQ9NV64 488 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 MRVI1Q9Y6F6 885 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 CNTNAP5Q8WYK1 1306 aa23.22■■□□□ 1.31
NUP88-204ENST00000572290 A6NJR5 290 aa23.21■■□□□ 1.31
NUP88-204ENST00000572290 PIK3CDO00329 1044 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms