RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 WTAPQ15007 396 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 SEC23AQ15436 765 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 STXBP2Q15833 593 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 CATIPQ7Z7H3 387 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 SLC17A8Q8NDX2 589 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 MTG1Q9BT17 334 aaPredicted RBP11.33□□□□□ -0.6
CIITA-207ENST00000571545 SCN10AQ9Y5Y9 1956 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 SZT2Q5T011 3432 aa11.33□□□□□ -0.6
CIITA-207ENST00000571545 IFIT3O14879 490 aaKnown RBP11.32□□□□□ -0.6
CIITA-207ENST00000571545 ITGB8P26012 769 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 KIF5BP33176 963 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 PURAQ00577 322 aaKnown RBP11.32□□□□□ -0.6
CIITA-207ENST00000571545 GHRHRQ02643 423 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 ARHGEF16Q5VV41 709 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 NFRKBQ6P4R8 1299 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 KCNV1Q6PIU1 500 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 RPUSD2Q8IZ73 545 aaKnown RBP11.32□□□□□ -0.6
CIITA-207ENST00000571545 PURBQ96QR8 312 aaKnown RBP11.32□□□□□ -0.6
CIITA-207ENST00000571545 RMDN3Q96TC7 470 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 JMJD4Q9H9V9 463 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 PCDHA1Q9Y5I3 950 aa11.32□□□□□ -0.6
CIITA-207ENST00000571545 PALM3A6NDB9 673 aaPredicted RBP11.31□□□□□ -0.6
CIITA-207ENST00000571545 A6NJR5 290 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 E7EWF7 191 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 EIF3JO75822 258 aaKnown RBP11.31□□□□□ -0.6
CIITA-207ENST00000571545 CFBP00751 764 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 GH1P01241 217 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 MYL3P08590 195 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 CSF2RAP15509 400 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 HSD17B4P51659 736 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 IRX5P78411 483 aaPredicted RBP11.31□□□□□ -0.6
CIITA-207ENST00000571545 GRM4Q14833 912 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 CASC1Q6TDU7 716 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 TMTC2Q8N394 836 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 CCDC155Q8N6L0 562 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 SYTL5Q8TDW5 730 aaPredicted RBP11.31□□□□□ -0.6
CIITA-207ENST00000571545 MAP4K1Q92918 833 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 MTMR8Q96EF0 704 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 MAP3K14Q99558 947 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 KATNAL1Q9BW62 490 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 PPP1R12CQ9BZL4 782 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 IL25Q9H293 177 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 ALDH8A1Q9H2A2 487 aaPredicted RBP11.31□□□□□ -0.6
CIITA-207ENST00000571545 IL23AQ9NPF7 189 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 MAD2L2Q9UI95 211 aa11.31□□□□□ -0.6
CIITA-207ENST00000571545 TANC1Q9C0D5 1861 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 B4GALT4O60513 344 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 DDAH1O94760 285 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 DNAJB2P25686 324 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 RFC2P35250 354 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 PTH1RQ03431 593 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 RAB30Q15771 203 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 TMEM67Q5HYA8 995 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 CYB5R4Q7L1T6 521 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 CTCFLQ8NI51 663 aaPredicted RBP11.3□□□□□ -0.6
CIITA-207ENST00000571545 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.3□□□□□ -0.6
CIITA-207ENST00000571545 NOC4LQ9BVI4 516 aaKnown RBP11.3□□□□□ -0.6
CIITA-207ENST00000571545 CPVLQ9H3G5 476 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 VAT1LQ9HCJ6 419 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 NOD1Q9Y239 953 aa11.3□□□□□ -0.6
CIITA-207ENST00000571545 PNMA6FA0A0J9YX94 578 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 GCOM1H8Y6P7 765 aaPredicted RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 STAM2O75886 525 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 FGBP02675 491 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 NR3C2P08235 984 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 POLR2MP0CAP2 368 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 CALM1P0DP23 149 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 CALM2P0DP24 149 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 CALM3P0DP25 149 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 ACTN1P12814 892 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 CASTP20810 708 aaKnown RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 GNAQP50148 359 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 EPHB4P54760 987 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 IRX6P78412 446 aaPredicted RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 BFSP2Q13515 415 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 DGKDQ16760 1214 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 TMEM240Q5SV17 173 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 RNF20Q5VTR2 975 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 CENPQQ7L2Z9 268 aaPredicted RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 STAG2Q8N3U4 1231 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 HERVK_113Q902F9 699 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 EMID1Q96A84 441 aaPredicted RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 TMEM87BQ96K49 555 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 GUCD1Q96NT3 240 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 LZTS2Q9BRK4 669 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 SEMA6BQ9H3T3 888 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 RIOX1Q9H6W3 641 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 PXMP2Q9NR77 195 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 SEC63Q9UGP8 760 aaKnown RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 RBM8AQ9Y5S9 174 aaKnown RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 MRVI1Q9Y6F6 885 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 DDX49Q9Y6V7 483 aaKnown RBP11.29□□□□□ -0.6
CIITA-207ENST00000571545 GRIN2DO15399 1336 aa11.29□□□□□ -0.6
CIITA-207ENST00000571545 PARNO95453 639 aaKnown RBP11.28□□□□□ -0.6
CIITA-207ENST00000571545 MMP3P08254 477 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 TGFB3P10600 412 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 EIF2AK2P19525 551 aaKnown RBP11.28□□□□□ -0.6
CIITA-207ENST00000571545 SMARCA1P28370 1054 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CCND2P30279 289 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CYP2C18P33260 490 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms