RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 NBNO60934 754 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 BMP3P12645 472 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 PWP2Q15269 919 aaKnown RBP21.58■■□□□ 1.05
CLK3-227ENST00000570296 EPC2Q52LR7 807 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 FAM117BQ6P1L5 589 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 SP7Q8TDD2 431 aaPredicted RBP21.58■■□□□ 1.05
CLK3-227ENST00000570296 PPP1R13LQ8WUF5 828 aa21.58■■□□□ 1.05
CLK3-227ENST00000570296 IGKV6D-41A0A0C4DH26 115 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 H3BNC9 293 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 ALAS1P13196 640 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 ADD2P35612 726 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 STAT2P52630 851 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 TCTN1Q2MV58 587 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 ERC1Q8IUD2 1116 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 FBXL6Q8N531 539 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 CTAGE1Q96RT6 745 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 DNAJC2Q99543 621 aaKnown RBP21.57■■□□□ 1.04
CLK3-227ENST00000570296 MKNK2Q9HBH9 465 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 FAM86C1Q9NVL1 165 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 ADD3Q9UEY8 706 aaKnown RBP21.57■■□□□ 1.04
CLK3-227ENST00000570296 PLXNA3P51805 1871 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 NLRC5Q86WI3 1866 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 MYH7P12883 1935 aa21.57■■□□□ 1.04
CLK3-227ENST00000570296 LTBRP36941 435 aa21.56■■□□□ 1.04
CLK3-227ENST00000570296 HTRA4P83105 476 aaPredicted RBP21.56■■□□□ 1.04
CLK3-227ENST00000570296 RPAINQ86UA6 219 aa21.56■■□□□ 1.04
CLK3-227ENST00000570296 FAM160B2Q86V87 743 aa21.56■■□□□ 1.04
CLK3-227ENST00000570296 CHURC1Q8WUH1 139 aa21.56■■□□□ 1.04
CLK3-227ENST00000570296 ALG13Q9NP73 1137 aaKnown RBP21.56■■□□□ 1.04
CLK3-227ENST00000570296 SLC4A4Q9Y6R1 1079 aa21.56■■□□□ 1.04
CLK3-227ENST00000570296 GVINP1Q7Z2Y8 2422 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 TMEM232C9JQI7 657 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 MBTPS2O43462 519 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 GPM6BQ13491 265 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 CTC1Q2NKJ3 1217 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 SLFN13Q68D06 897 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 SESTD1Q86VW0 696 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 LRRC47Q8N1G4 583 aaKnown RBP21.55■■□□□ 1.04
CLK3-227ENST00000570296 DHX38Q92620 1227 aaKnown RBP21.55■■□□□ 1.04
CLK3-227ENST00000570296 RALGAPA2Q2PPJ7 1873 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 ATG2AQ2TAZ0 1938 aa21.55■■□□□ 1.04
CLK3-227ENST00000570296 COL4A6Q14031 1691 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 ALDH5A1P51649 535 aaPredicted RBP21.54■■□□□ 1.04
CLK3-227ENST00000570296 PPP2R5BQ15173 497 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 MUM1L1Q5H9M0 696 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 NSMFQ6X4W1 530 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 STAG1Q8WVM7 1258 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 ATOH1Q92858 354 aaPredicted RBP21.54■■□□□ 1.04
CLK3-227ENST00000570296 MTMR4Q9NYA4 1195 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 TNNQ9UQP3 1299 aa21.54■■□□□ 1.04
CLK3-227ENST00000570296 DMDP11532 3685 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 PROB1E7EW31 1015 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 STXBP3O00186 592 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 TTLL1O95922 423 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 AMHP03971 560 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 CKBP12277 381 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 SMAD4Q13485 552 aaKnown RBP21.53■■□□□ 1.04
CLK3-227ENST00000570296 SLFNL1Q499Z3 407 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 SBK1Q52WX2 424 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 GDF6Q6KF10 455 aaPredicted RBP21.53■■□□□ 1.04
CLK3-227ENST00000570296 CEP95Q96GE4 821 aa21.53■■□□□ 1.04
CLK3-227ENST00000570296 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.53■■□□□ 1.049e-8■■□□□ 13.6
CLK3-227ENST00000570296 PLA2G6O60733 806 aa21.52■■□□□ 1.04
CLK3-227ENST00000570296 ZXDAP98168 799 aa21.52■■□□□ 1.04
CLK3-227ENST00000570296 CLUAP1Q96AJ1 413 aa21.52■■□□□ 1.04
CLK3-227ENST00000570296 PURBQ96QR8 312 aaKnown RBP21.52■■□□□ 1.04
CLK3-227ENST00000570296 ISY1Q9ULR0 285 aaKnown RBP21.52■■□□□ 1.04
CLK3-227ENST00000570296 IKQ13123 557 aaPredicted RBP21.51■■□□□ 1.03
CLK3-227ENST00000570296 UBE3CQ15386 1083 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 CLUL1Q15846 466 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 SCFD2Q8WU76 684 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 GMCL1Q96IK5 515 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 C1orf115Q9H7X2 142 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 PAG1Q9NWQ8 432 aa21.51■■□□□ 1.03
CLK3-227ENST00000570296 EPG5Q9HCE0 2579 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 CHMP4BP1P59074 171 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 MKRN4PQ13434 485 aaPredicted RBP21.5■■□□□ 1.03
CLK3-227ENST00000570296 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.5■■□□□ 1.035e-12■■□□□ 14.3
CLK3-227ENST00000570296 FBXO11Q86XK2 927 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 TMEM192Q8IY95 271 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 MYOCDQ8IZQ8 938 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 TMEM57Q8N5G2 664 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 ZNF287Q9HBT7 754 aa21.5■■□□□ 1.03
CLK3-227ENST00000570296 LGR5O75473 907 aa21.49■■□□□ 1.03
CLK3-227ENST00000570296 NUBP1P53384 320 aa21.49■■□□□ 1.03
CLK3-227ENST00000570296 CCPG1Q9ULG6 757 aa21.49■■□□□ 1.03
CLK3-227ENST00000570296 EXOC6BQ9Y2D4 811 aa21.49■■□□□ 1.03
CLK3-227ENST00000570296 SLC1A4P43007 532 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 DLX2Q07687 328 aaPredicted RBP21.48■■□□□ 1.03
CLK3-227ENST00000570296 BAATQ14032 418 aaPredicted RBP21.48■■□□□ 1.03
CLK3-227ENST00000570296 TRAF7Q6Q0C0 670 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 ZNF444Q8N0Y2 327 aaPredicted RBP21.48■■□□□ 1.03
CLK3-227ENST00000570296 FRAT1Q92837 279 aaPredicted RBP21.48■■□□□ 1.03
CLK3-227ENST00000570296 COPS5Q92905 334 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 MPHOSPH6Q99547 160 aaKnown RBP21.48■■□□□ 1.03
CLK3-227ENST00000570296 IL1RAPL2Q9NP60 686 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 CD207Q9UJ71 328 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 EMSYQ7Z589 1322 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 VPS13AQ96RL7 3174 aa21.48■■□□□ 1.03
CLK3-227ENST00000570296 PLIN4Q96Q06 1357 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 123 ms