RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	U2AF1L4	Q8WU68	220 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	HDAC7	Q8WUI4	952 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	MTRF1L	Q9UGC7	380 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	PSMD14	O00487	310 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	RGS16	O15492	202 aa	Predicted RBP	12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	FCER1A	P12319	257 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	DHX9	Q08211	1270 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	PLS1	Q14651	629 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	GRIPAP1	Q4V328	841 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	FAM133B	Q5BKY9	247 aa	Known RBP	12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	NLRP10	Q86W26	655 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	CCDC65	Q8IXS2	484 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	SYCP3	Q8IZU3	236 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	TRAPPC10	P48553	1259 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	NTRK3	Q16288	839 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	NLRP14	Q86W24	1093 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	MYOCD	Q8IZQ8	938 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	CCDC63	Q8NA47	563 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	ZIM3	Q96PE6	472 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	HSD3B7	Q9H2F3	369 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	CD248	Q9HCU0	757 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	12.55	□□□□□ -0.4	6e-9	■■■■■ 134.6
CLN3-238	ENST00000569430	HEG1	Q9ULI3	1381 aa		12.55	□□□□□ -0.4
CLN3-238	ENST00000569430	PLEKHG2	Q9H7P9	1386 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	SLCO1A2	P46721	670 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	CCDC6	Q16204	474 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	MRRF	Q96E11	262 aa	Known RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	CCT8L2	Q96SF2	557 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	RBM12	Q9NTZ6	932 aa	Known RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	PPP1R37	O75864	691 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	LACTB	P83111	547 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	PICALM	Q13492	652 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	MAN2A1	Q16706	1144 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	KRT25	Q7Z3Z0	450 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	HOOK3	Q86VS8	718 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	REXO1	Q8N1G1	1221 aa	Known RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	OR2W6P	Q8NHA6	318 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	STAG1	Q8WVM7	1258 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	KLC4	Q9NSK0	619 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430		A0A087X0B3	334 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	KLRF2	D3W0D1	207 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	LSP1	P33241	339 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	MTMR3	Q13615	1198 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	ANKRD40	Q6AI12	368 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	TBC1D1	Q86TI0	1168 aa	Predicted RBP	12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	PCDHB13	Q9Y5F0	798 aa		12.54	□□□□□ -0.4
CLN3-238	ENST00000569430	SRCAP	Q6ZRS2	3230 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	FLOT1	O75955	427 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	VWA3B	Q502W6	1294 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	DENND2C	Q68D51	928 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	TRIM68	Q6AZZ1	485 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	ZBTB1	Q9Y2K1	713 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	ITIH6	Q6UXX5	1313 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430		F8W031	263 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	PCK1	P35558	622 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	GJC1	P36383	396 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	SLC1A4	P43007	532 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	ATP2C1	P98194	919 aa	Predicted RBP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	CHRND	Q07001	517 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	ADCY1	Q08828	1119 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	CALCOCO2	Q13137	446 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	TMTC3	Q6ZXV5	915 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	MAPKAPK5	Q8IW41	473 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	FBF1	Q8TES7	1133 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	RNPC3	Q96LT9	517 aa	Known RBP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	EIF4E1B	A6NMX2	242 aa	Known RBP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	ERVV-2	B6SEH9	535 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	FANCG	O15287	622 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	CCDC197	Q8NCU1	140 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	DDX47	Q9H0S4	455 aa	Known RBP	12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	PCDHA4	Q9UN74	947 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	MAP3K15	Q6ZN16	1313 aa		12.53	□□□□□ -0.4
CLN3-238	ENST00000569430	DDAH1	O94760	285 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	MYBL2	P10244	700 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	PLTP	P55058	493 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	EARS2	Q5JPH6	523 aa	Known RBP	12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	CDKAL1	Q5VV42	579 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	NEK8	Q86SG6	692 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	ZNF473	Q8WTR7	871 aa	Known RBP	12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	CAPN6	Q9Y6Q1	641 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	XDH	P47989	1333 aa		12.52	□□□□□ -0.4
CLN3-238	ENST00000569430	HMGB1P1	B2RPK0	211 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	RNF225	M0QZC1	329 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	LDHC	P07864	332 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	TMOD1	P28289	359 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	SLC8A1	P32418	973 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	SARS	P49591	514 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	RBM5	P52756	815 aa	Known RBP eCLIP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	MAGOH	P61326	146 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	HERVK_113	P62684	666 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	SARNP	P82979	210 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	LRCH2	Q5VUJ6	765 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	ADSSL1	Q8N142	457 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	MAGOHB	Q96A72	148 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	PPP1R12C	Q9BZL4	782 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	FAM53C	Q9NYF3	392 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	CLGN	O14967	610 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	SYF2	O95926	243 aa	Known RBP	12.52	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms