RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FGBP02675 491 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 CCL23P55773 120 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 SEC23AQ15436 765 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 MCF2L2Q86YR7 1114 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 MAFAQ8NHW3 353 aaPredicted RBP18.77■□□□□ 0.59
CLN3-229ENST00000567963 SYTL5Q8TDW5 730 aaPredicted RBP18.77■□□□□ 0.59
CLN3-229ENST00000567963 HERVK_113Q902F9 699 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 TAAR1Q96RJ0 339 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 MTG1Q9BT17 334 aaPredicted RBP18.77■□□□□ 0.59
CLN3-229ENST00000567963 ZNF576Q9H609 170 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 RAD50Q92878 1312 aa18.77■□□□□ 0.59
CLN3-229ENST00000567963 GRXCR1A8MXD5 290 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 DHX16O60231 1041 aaKnown RBP18.76■□□□□ 0.59
CLN3-229ENST00000567963 SUPT20HL2P0C7V6 817 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 FOSL2P15408 326 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 TTLL4Q14679 1199 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 GRIN2CQ14957 1233 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 CYB5R4Q7L1T6 521 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 FBXO11Q86XK2 927 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 STAG2Q8N3U4 1231 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 NSUN6Q8TEA1 469 aaKnown RBP18.76■□□□□ 0.59
CLN3-229ENST00000567963 TIFAQ96CG3 184 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 PBX4Q9BYU1 374 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 WNT8AQ9H1J5 351 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 TRMT13Q9NUP7 481 aaKnown RBP18.76■□□□□ 0.59
CLN3-229ENST00000567963 COL20A1Q9P218 1284 aa18.76■□□□□ 0.59
CLN3-229ENST00000567963 MRPL11Q9Y3B7 192 aaKnown RBP18.76■□□□□ 0.59
CLN3-229ENST00000567963 KPNA6O60684 536 aa18.75■□□□□ 0.59
CLN3-229ENST00000567963 ARIH2O95376 493 aa18.75■□□□□ 0.59
CLN3-229ENST00000567963 PBX2P40425 430 aa18.75■□□□□ 0.59
CLN3-229ENST00000567963 CCDC62Q6P9F0 684 aa18.75■□□□□ 0.59
CLN3-229ENST00000567963 IWS1Q96ST2 819 aa18.75■□□□□ 0.59
CLN3-229ENST00000567963 CXXC1Q9P0U4 656 aaPredicted RBP18.75■□□□□ 0.59
CLN3-229ENST00000567963 SCN10AQ9Y5Y9 1956 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 CHMLP26374 656 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 TRDNQ13061 729 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 STXBP2Q15833 593 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 NBPF20Q3BBV1 942 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 RPUSD2Q8IZ73 545 aaKnown RBP18.74■□□□□ 0.59
CLN3-229ENST00000567963 RUFY2Q8WXA3 655 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 RMDN3Q96TC7 470 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 MAD2L2Q9UI95 211 aa18.74■□□□□ 0.59
CLN3-229ENST00000567963 KLRF2D3W0D1 207 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 CYP21A2P08686 494 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 CYP2C9P11712 490 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 PTH1RQ03431 593 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 LY6KQ17RY6 165 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 NFRKBQ6P4R8 1299 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 SEPT14Q6ZU15 432 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 OTOP2Q7RTS6 562 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 MTMR8Q96EF0 704 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 SCLYQ96I15 445 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 AMNQ9BXJ7 453 aa18.73■□□□□ 0.59
CLN3-229ENST00000567963 MTIF3Q9H2K0 278 aaKnown RBP18.73■□□□□ 0.59
CLN3-229ENST00000567963 U3KPZ7 1027 aaPredicted RBP18.73■□□□□ 0.59
CLN3-229ENST00000567963 VWCEQ96DN2 955 aa18.72■□□□□ 0.59
CLN3-229ENST00000567963 KIAA1217Q5T5P2 1943 aa18.72■□□□□ 0.59
CLN3-229ENST00000567963 CHD9Q3L8U1 2897 aa18.72■□□□□ 0.59
CLN3-229ENST00000567963 PALM3A6NDB9 673 aaPredicted RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 OPLAHO14841 1288 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 ZBTB5O15062 677 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 CFBP00751 764 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 IRX6P78412 446 aaPredicted RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 FAM47CQ5HY64 1035 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 ARHGEF16Q5VV41 709 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 PPP1R11O60927 126 aaPredicted RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 GH1P01241 217 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 HSD17B4P51659 736 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 GHRHRQ02643 423 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 PTPN11Q06124 597 aaPredicted RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 PPP1R13LQ8WUF5 828 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 AFG1LQ8WV93 481 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 COL25A1Q9BXS0 654 aaPredicted RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 PXMP2Q9NR77 195 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 MAP3K20Q9NYL2 800 aaKnown RBP18.71■□□□□ 0.59
CLN3-229ENST00000567963 MSRAQ9UJ68 235 aa18.71■□□□□ 0.59
CLN3-229ENST00000567963 IFIT3O14879 490 aaKnown RBP18.7■□□□□ 0.58
CLN3-229ENST00000567963 EIF3JO75822 258 aaKnown RBP18.7■□□□□ 0.58
CLN3-229ENST00000567963 NR3C2P08235 984 aa18.7■□□□□ 0.58
CLN3-229ENST00000567963 MMP3P08254 477 aa18.7■□□□□ 0.58
CLN3-229ENST00000567963 EIF2AK2P19525 551 aaKnown RBP18.7■□□□□ 0.58
CLN3-229ENST00000567963 ARHGAP1Q07960 439 aa18.7■□□□□ 0.58
CLN3-229ENST00000567963 RAB30Q15771 203 aa18.7■□□□□ 0.58
CLN3-229ENST00000567963 DDX41Q9UJV9 622 aaKnown RBP18.7■□□□□ 0.58
CLN3-229ENST00000567963 PCDHA1Q9Y5I3 950 aa18.7■□□□□ 0.58
CLN3-229ENST00000567963 ERICH2A1L162 156 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 E7EWF7 191 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 SGSM2O43147 1006 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 PFKMP08237 780 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 GRM4Q14833 912 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 SAMD3Q8N6K7 520 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 NCOA7Q8NI08 942 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 RIOX1Q9H6W3 641 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 SENP2Q9HC62 589 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 TAF6LQ9Y6J9 622 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 SLC4A7Q9Y6M7 1214 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 GBF1Q92538 1859 aa18.69■□□□□ 0.58
CLN3-229ENST00000567963 PITPNM1O00562 1244 aa18.68■□□□□ 0.58
CLN3-229ENST00000567963 SLC35G1Q2M3R5 365 aa18.68■□□□□ 0.58
CLN3-229ENST00000567963 STOX1Q6ZVD7 989 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms