RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 NFXL1Q6ZNB6 911 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 TMTC2Q8N394 836 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 GPHNQ9NQX3 736 aaPredicted RBP24.07■■□□□ 1.44
CLN3-219ENST00000565778 POLR3EQ9NVU0 708 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 LCTP09848 1927 aa24.07■■□□□ 1.44
CLN3-219ENST00000565778 MYL3P08590 195 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 PSMC6P62333 389 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 FPGSQ05932 587 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 TTLL4Q14679 1199 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 SLC35G1Q2M3R5 365 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 SEPT14Q6ZU15 432 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 FAM126BQ8IXS8 530 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 COPS5Q92905 334 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 LY9Q9HBG7 655 aa24.06■■□□□ 1.44
CLN3-219ENST00000565778 PNMA6FA0A0J9YX94 578 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 CYTH3O43739 400 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 EIF2AK2P19525 551 aaKnown RBP24.05■■□□□ 1.44
CLN3-219ENST00000565778 DEFB123Q8N688 67 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 SLC43A3Q8NBI5 491 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 CTCFLQ8NI51 663 aaPredicted RBP24.05■■□□□ 1.44
CLN3-219ENST00000565778 PIBF1Q8WXW3 757 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 TMEM87BQ96K49 555 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 MTA3Q9BTC8 594 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 SEZ6LQ9BYH1 1024 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 MAP3K20Q9NYL2 800 aaKnown RBP24.05■■□□□ 1.44
CLN3-219ENST00000565778 TBX21Q9UL17 535 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 GRIN2DO15399 1336 aa24.05■■□□□ 1.44
CLN3-219ENST00000565778 SZT2Q5T011 3432 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 CCDC69A6NI79 296 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 OPLAHO14841 1288 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 KIF5BP33176 963 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 HSD17B4P51659 736 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 ZNF654Q8IZM8 581 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 SAMD3Q8N6K7 520 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 MAP3K14Q99558 947 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 MYL10Q9BUA6 226 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 PXMP2Q9NR77 195 aa24.04■■□□□ 1.44
CLN3-219ENST00000565778 CD4P01730 458 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 NR3C2P08235 984 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 HOXA13P31271 388 aaPredicted RBP24.03■■□□□ 1.44
CLN3-219ENST00000565778 EPHB4P54760 987 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 RNF20Q5VTR2 975 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 MFSD5Q6N075 450 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 Q7L0L9 218 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 PPP1R12CQ9BZL4 782 aa24.03■■□□□ 1.44
CLN3-219ENST00000565778 LRRC37A2A6NM11 1700 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 KPNA6O60684 536 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 EIF3JO75822 258 aaKnown RBP24.02■■□□□ 1.44
CLN3-219ENST00000565778 DDAH1O94760 285 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 ARIH2O95376 493 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 PURAQ00577 322 aaKnown RBP24.02■■□□□ 1.44
CLN3-219ENST00000565778 LY6KQ17RY6 165 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 MTG1Q9BT17 334 aaPredicted RBP24.02■■□□□ 1.44
CLN3-219ENST00000565778 LTBP2Q14767 1821 aa24.02■■□□□ 1.44
CLN3-219ENST00000565778 GCOM1H8Y6P7 765 aaPredicted RBP24.01■■□□□ 1.43
CLN3-219ENST00000565778 SH2B2O14492 632 aaPredicted RBP24.01■■□□□ 1.43
CLN3-219ENST00000565778 CDC45O75419 566 aa24.01■■□□□ 1.43
CLN3-219ENST00000565778 POLR2MP0CAP2 368 aa24.01■■□□□ 1.43
CLN3-219ENST00000565778 MYCLP12524 364 aaPredicted RBP24.01■■□□□ 1.43
CLN3-219ENST00000565778 CCDC62Q6P9F0 684 aa24.01■■□□□ 1.43
CLN3-219ENST00000565778 TMEM199Q8N511 208 aa24.01■■□□□ 1.43
CLN3-219ENST00000565778 TRPV6Q9H1D0 765 aa24.01■■□□□ 1.43
CLN3-219ENST00000565778 LAMA3Q16787 3333 aa24■■□□□ 1.43
CLN3-219ENST00000565778 A6NJR5 290 aa24■■□□□ 1.43
CLN3-219ENST00000565778 GH1P01241 217 aa24■■□□□ 1.43
CLN3-219ENST00000565778 LIFRP42702 1097 aa24■■□□□ 1.43
CLN3-219ENST00000565778 GNAQP50148 359 aa24■■□□□ 1.43
CLN3-219ENST00000565778 GHRHRQ02643 423 aa24■■□□□ 1.43
CLN3-219ENST00000565778 COL9A3Q14050 684 aaPredicted RBP24■■□□□ 1.43
CLN3-219ENST00000565778 FCHSD1Q86WN1 690 aa24■■□□□ 1.43
CLN3-219ENST00000565778 RRP36Q96EU6 259 aaKnown RBP24■■□□□ 1.43
CLN3-219ENST00000565778 RNPC3Q96LT9 517 aaKnown RBP24■■□□□ 1.43
CLN3-219ENST00000565778 LZTS2Q9BRK4 669 aa24■■□□□ 1.43
CLN3-219ENST00000565778 LRRC2Q9BYS8 371 aa24■■□□□ 1.43
CLN3-219ENST00000565778 B4GALT4O60513 344 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 CALM1P0DP23 149 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 CALM2P0DP24 149 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 CALM3P0DP25 149 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 SMARCA1P28370 1054 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 CYP2C18P33260 490 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 PPIGQ13427 754 aaKnown RBP eCLIP23.99■■□□□ 1.436e-7■■□□□ 11.8
CLN3-219ENST00000565778 PDCD2LQ9BRP1 358 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 SPZ1Q9BXG8 430 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 HIPK3Q9H422 1215 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 SLC12A7Q9Y666 1083 aa23.99■■□□□ 1.43
CLN3-219ENST00000565778 MYH6P13533 1939 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 CSF2RAP15509 400 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 RXRAP19793 462 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 CHMP4BP1P59074 171 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 NBPF20Q3BBV1 942 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 FAM47CQ5HY64 1035 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 AFG1LQ8WV93 481 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 NEK1Q96PY6 1258 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 ALDH8A1Q9H2A2 487 aaPredicted RBP23.98■■□□□ 1.43
CLN3-219ENST00000565778 SEC63Q9UGP8 760 aaKnown RBP23.98■■□□□ 1.43
CLN3-219ENST00000565778 DDX41Q9UJV9 622 aaKnown RBP23.98■■□□□ 1.43
CLN3-219ENST00000565778 MRVI1Q9Y6F6 885 aa23.98■■□□□ 1.43
CLN3-219ENST00000565778 SUPT20HL2P0C7V6 817 aa23.97■■□□□ 1.43
CLN3-219ENST00000565778 PGM5Q15124 567 aa23.97■■□□□ 1.43
CLN3-219ENST00000565778 SYNE3Q6ZMZ3 975 aa23.97■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms