RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 KCTD1Q719H9 257 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 NEDD1Q8NHV4 660 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 MORC4Q8TE76 937 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 GMCL1Q96IK5 515 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 RAD9AQ99638 391 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 PRR12Q9ULL5 1215 aa8.69□□□□□ -1.02
VPS4A-203ENST00000564399 MICAL3Q7RTP6 2002 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 LINC01553A4QN01 128 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 GRXCR2A6NFK2 248 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 H3BQ06 376 aaPredicted RBP8.68□□□□□ -1.02
VPS4A-203ENST00000564399 NKRFO15226 690 aaKnown RBP eCLIP8.68□□□□□ -1.02
VPS4A-203ENST00000564399 SLC3A2P08195 630 aaKnown RBP8.68□□□□□ -1.02
VPS4A-203ENST00000564399 SELPP16109 830 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 PDE4BQ07343 736 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 PDE4DQ08499 809 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 PUS10Q3MIT2 529 aaKnown RBP8.68□□□□□ -1.02
VPS4A-203ENST00000564399 RCSD1Q6JBY9 416 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 CNKSR3Q6P9H4 555 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 FBXO22Q8NEZ5 403 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 CAGE1Q8TC20 777 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 PANK1Q8TE04 598 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 AFAP1L1Q8TED9 768 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 COPS5Q92905 334 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 MPHOSPH6Q99547 160 aaKnown RBP8.68□□□□□ -1.02
VPS4A-203ENST00000564399 KCNH6Q9H252 994 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 STX8Q9UNK0 236 aa8.68□□□□□ -1.02
VPS4A-203ENST00000564399 LOC102724159A0A0B4J2E5 919 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 ABHD14A-ACY1A0A1B0GW23 586 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 RBM47A0AV96 593 aaKnown RBP8.67□□□□□ -1.02
VPS4A-203ENST00000564399 A6NJR5 290 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 MYH7BA7E2Y1 1941 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 GPAA1O43292 621 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 PLA2G6O60733 806 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 TECTAO75443 2155 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 CACNA1HO95180 2353 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 GJB5O95377 273 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 PARNO95453 639 aaKnown RBP8.67□□□□□ -1.02
VPS4A-203ENST00000564399 ICAM1P05362 532 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 TXNP10599 105 aaKnown RBP8.67□□□□□ -1.02
VPS4A-203ENST00000564399 GNAT2P19087 354 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 CALML3P27482 149 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 IKBKEQ14164 716 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 PWP2Q15269 919 aaKnown RBP8.67□□□□□ -1.02
VPS4A-203ENST00000564399 CCDC96Q2M329 555 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 PPP4R3BQ5MIZ7 849 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 LRRC8DQ7L1W4 858 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 SCFD2Q8WU76 684 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 APPBP2Q92624 585 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 OSBP2Q969R2 916 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 NACAP1Q9BZK3 213 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 EPB41L4AQ9HCS5 686 aaPredicted RBP8.67□□□□□ -1.02
VPS4A-203ENST00000564399 CTNNA3Q9UI47 895 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 FAM50BQ9Y247 325 aa8.67□□□□□ -1.02
VPS4A-203ENST00000564399 PLIN4Q96Q06 1357 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 TSPY2A6NKD2 308 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 B4DLN1 442 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 PATL2C9JE40 543 aaKnown RBP8.66□□□□□ -1.02
VPS4A-203ENST00000564399 NFIBO00712 420 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 RNF113AO15541 343 aaKnown RBP8.66□□□□□ -1.02
VPS4A-203ENST00000564399 EFCAB14O75071 495 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 SLC16A2P36021 539 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 MRPL12P52815 198 aaKnown RBP8.66□□□□□ -1.02
VPS4A-203ENST00000564399 PTPROQ16827 1216 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 GDF6Q6KF10 455 aaPredicted RBP8.66□□□□□ -1.02
VPS4A-203ENST00000564399 SLC30A10Q6XR72 485 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 RNF207Q6ZRF8 634 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 IFNL3Q8IZI9 196 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 KBTBD3Q8NAB2 608 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 C17orf80Q9BSJ5 609 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 INSL6Q9Y581 213 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 SPTBN4Q9H254 2564 aa8.66□□□□□ -1.02
VPS4A-203ENST00000564399 POTEB3A0JP26 581 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 M0R2C6 588 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 NBNO60934 754 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 CXCL10P02778 98 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 ZFYP08048 801 aaPredicted RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 CKBP12277 381 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 PPARAQ07869 468 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 GPNMBQ14956 572 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 TIGD5Q53EQ6 642 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 TTBK2Q6IQ55 1244 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 POTEBQ6S5H4 581 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 HFE2Q6ZVN8 426 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 RASGRP2Q7LDG7 609 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 CHST3Q7LGC8 479 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 SIRT2Q8IXJ6 389 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 MYOCDQ8IZQ8 938 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 NEK9Q8TD19 979 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 AFG1LQ8WV93 481 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 DHX38Q92620 1227 aaKnown RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 MRPL38Q96DV4 380 aaKnown RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 MFSD14AQ96MC6 490 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 ALG1Q9BT22 464 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 UPF3BQ9BZI7 483 aaKnown RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 NAPBQ9H115 298 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 RANBP17Q9H2T7 1088 aaKnown RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 ECHDC1Q9NTX5 307 aa8.65□□□□□ -1.02
VPS4A-203ENST00000564399 U3KPZ7 1027 aaPredicted RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 RIF1Q5UIP0 2472 aaKnown RBP8.65□□□□□ -1.02
VPS4A-203ENST00000564399 KIAA1217Q5T5P2 1943 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms