RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 RIN3Q8TB24 985 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 RAPGEF4Q8WZA2 1011 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 NOC4LQ9BVI4 516 aaKnown RBP7.15□□□□□ -1.26
VPS35-204ENST00000563884 LTBP3Q9NS15 1303 aa7.15□□□□□ -1.26
VPS35-204ENST00000563884 BCORQ6W2J9 1755 aa7.15□□□□□ -1.27
VPS35-204ENST00000563884 CEP290O15078 2479 aa7.15□□□□□ -1.27
VPS35-204ENST00000563884 GRK4P32298 578 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 CAP2P40123 477 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 TAF1CQ15572 869 aaPredicted RBP7.14□□□□□ -1.27
VPS35-204ENST00000563884 CCDC85BQ15834 202 aaPredicted RBP7.14□□□□□ -1.27
VPS35-204ENST00000563884 PKN2Q16513 984 aaKnown RBP7.14□□□□□ -1.27
VPS35-204ENST00000563884 MEI1Q5TIA1 1274 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 PRAMEF13Q5VWM6 474 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 AGMOQ6ZNB7 445 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 KTN1Q86UP2 1357 aaKnown RBP7.14□□□□□ -1.27
VPS35-204ENST00000563884 KRTAP4-7Q9BYR0 210 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 DDX21Q9NR30 783 aaKnown RBP eCLIP7.14□□□□□ -1.27
VPS35-204ENST00000563884 SCN11AQ9UI33 1791 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 HACL1Q9UJ83 578 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 CAPN6Q9Y6Q1 641 aa7.14□□□□□ -1.27
VPS35-204ENST00000563884 COL11A2P13942 1736 aaPredicted RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 INSRP06213 1382 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 MAP3K19Q56UN5 1328 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 CENPJQ9HC77 1338 aaPredicted RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 DDNO94850 711 aaPredicted RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 CYP7A1P22680 504 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 RAP1GAPP47736 663 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 SOGA3Q5TF21 947 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 PRR23BQ6ZRT6 265 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 CTU1Q7Z7A3 348 aaKnown RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 BHLHE22Q8NFJ8 381 aaPredicted RBP7.13□□□□□ -1.27
VPS35-204ENST00000563884 UBE2FQ969M7 185 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 HHIPL1Q96JK4 782 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 FAM161BQ96MY7 647 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 TAOK3Q9H2K8 898 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 SAGE1Q9NXZ1 904 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 A0A0C4DFX4 3053 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 ANKRD31Q8N7Z5 1873 aa7.13□□□□□ -1.27
VPS35-204ENST00000563884 CST3P01034 146 aaPredicted RBP7.12□□□□□ -1.27
VPS35-204ENST00000563884 EPHX2P34913 555 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 GDNFP39905 211 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 SEPT6Q14141 434 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 FBLN7Q53RD9 439 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 SPOCD1Q6ZMY3 1216 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 THAP5Q7Z6K1 395 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 IP6K1Q92551 441 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 CCDC120Q96HB5 630 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 PPP1R16BQ96T49 567 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 MPHOSPH9Q99550 1183 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 ZSWIM5Q9P217 1185 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 PCDHB5Q9Y5E4 795 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 ST14Q9Y5Y6 855 aa7.12□□□□□ -1.27
VPS35-204ENST00000563884 RTL1A6NKG5 1358 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 EVC2Q86UK5 1308 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 ANKRD26Q9UPS8 1709 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 H0YIN7 160 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 SORBS3O60504 671 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 RLBP1P12271 317 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 LIG3P49916 1009 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 NOGQ13253 232 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 MAP3K11Q16584 847 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 SYDE1Q6ZW31 735 aaPredicted RBP7.11□□□□□ -1.27
VPS35-204ENST00000563884 CDH24Q86UP0 819 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 HOMEZQ8IX15 550 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 LTV1Q96GA3 475 aaPredicted RBP7.11□□□□□ -1.27
VPS35-204ENST00000563884 CRELD1Q96HD1 420 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 TOX2Q96NM4 488 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 ALPK1Q96QP1 1244 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 C19orf73Q9NVV2 129 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 TMOD3Q9NYL9 352 aa7.11□□□□□ -1.27
VPS35-204ENST00000563884 PAPPA2Q9BXP8 1791 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 KIR3DL1P43629 444 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 CIAPIN1Q6FI81 312 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 COX4I2Q96KJ9 171 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 DIRC2Q96SL1 478 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 DPH2Q9BQC3 489 aaPredicted RBP7.1□□□□□ -1.27
VPS35-204ENST00000563884 SLAMF8Q9P0V8 285 aa7.1□□□□□ -1.27
VPS35-204ENST00000563884 KDRP35968 1356 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 USP42Q9H9J4 1324 aaKnown RBP7.09□□□□□ -1.27
VPS35-204ENST00000563884 SLX4Q8IY92 1834 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 GFRA2O00451 464 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 RPS6KA4O75676 772 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 PGRP06401 933 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 TNK2Q07912 1038 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 DDR1Q08345 913 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 ITPK1Q13572 414 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 TTC6Q86TZ1 520 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 C2CD5Q86YS7 1000 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 PIGBQ92521 554 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 TACC3Q9Y6A5 838 aa7.09□□□□□ -1.27
VPS35-204ENST00000563884 TJP1Q07157 1748 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 RBAK-RBAKDNI3L0D1 243 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 POLRMTO00411 1230 aaKnown RBP7.08□□□□□ -1.28
VPS35-204ENST00000563884 TSPAN15O95858 294 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 RAC2P15153 192 aa7.08□□□□□ -1.28
VPS35-204ENST00000563884 TFE3P19532 575 aaPredicted RBP7.08□□□□□ -1.28
VPS35-204ENST00000563884 MRPL58Q14197 206 aaKnown RBP7.08□□□□□ -1.28
VPS35-204ENST00000563884 CCDC84Q86UT8 332 aaPredicted RBP7.08□□□□□ -1.28
VPS35-204ENST00000563884 PHC3Q8NDX5 983 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms