RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PTPREP23469 700 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 SYKP43405 635 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 GJA8P48165 433 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 SNW1Q13573 536 aaKnown RBP10.16□□□□□ -0.78
VPS39-207ENST00000563692 ZRSR1Q15695 479 aaKnown RBP10.16□□□□□ -0.78
VPS39-207ENST00000563692 UVSSAQ2YD98 709 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 AXDND1Q5T1B0 1012 aaPredicted RBP10.16□□□□□ -0.78
VPS39-207ENST00000563692 MCTP2Q6DN12 878 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 CATSPERGQ6ZRH7 1159 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 KCTD1Q719H9 257 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 SIAH1Q8IUQ4 282 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 TRMT44Q8IYL2 757 aaKnown RBP10.16□□□□□ -0.78
VPS39-207ENST00000563692 FMR1NBQ8N0W7 255 aaPredicted RBP10.16□□□□□ -0.78
VPS39-207ENST00000563692 JMJD4Q9H9V9 463 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 TXNRD2Q9NNW7 524 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 HOXC10Q9NYD6 342 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 PCDHA6Q9UN73 950 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 TMX2Q9Y320 296 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 PCDHB6Q9Y5E3 794 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 PCDHA8Q9Y5H6 950 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 IVNS1ABPQ9Y6Y0 642 aa10.16□□□□□ -0.78
VPS39-207ENST00000563692 FAM237AA0A1B0GTK4 181 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 LAD1O00515 517 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 ZNF202O95125 648 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 CYP2B6P20813 491 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 RGS2P41220 211 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 ADCY7P51828 1080 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 NDUFA8P51970 172 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 IKQ13123 557 aaPredicted RBP10.15□□□□□ -0.78
VPS39-207ENST00000563692 COG2Q14746 738 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 NONOQ15233 471 aaKnown RBP eCLIP10.15□□□□□ -0.78
VPS39-207ENST00000563692 ZNF174Q15697 407 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 NPY5RQ15761 445 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 SLC35G1Q2M3R5 365 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 RESP18Q5W5W9 173 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 TTBK2Q6IQ55 1244 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 RBM43Q6ZSC3 357 aaKnown RBP10.15□□□□□ -0.78
VPS39-207ENST00000563692 GPR142Q7Z601 462 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 PLEKHH3Q7Z736 793 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 CLEC10AQ8IUN9 316 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 U2AF1L4Q8WU68 220 aaKnown RBP10.15□□□□□ -0.78
VPS39-207ENST00000563692 CHURC1Q8WUH1 139 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 SHISA4Q96DD7 197 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 PYM1Q9BRP8 204 aaKnown RBP10.15□□□□□ -0.78
VPS39-207ENST00000563692 UNC93B1Q9H1C4 597 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 RBSNQ9H1K0 784 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 CPVLQ9H3G5 476 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 GOLPH3LQ9H4A5 285 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 RBPJLQ9UBG7 517 aa10.15□□□□□ -0.78
VPS39-207ENST00000563692 ZSWIM8A7E2V4 1837 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 TMEM232C9JQI7 657 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 M0R2N6 131 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 FLOT1O75955 427 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 FARP2O94887 1054 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 NDUFB10O96000 172 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 TFRCP02786 760 aaKnown RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 XRCC5P13010 732 aaKnown RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 PFKFB1P16118 471 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 SLC16A2P36021 539 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 ORC2Q13416 577 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 ARL6IP4Q66PJ3 421 aaKnown RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 KANK3Q6NY19 840 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 SAMD1Q6SPF0 538 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 LBX2Q6XYB7 198 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 CKAP2LQ8IYA6 745 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 ELOA2Q8IYF1 753 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 SPICE1Q8N0Z3 855 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 REXO1Q8N1G1 1221 aaKnown RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 MB21D1Q8N884 522 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 CUL5Q93034 780 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 MTMR8Q96EF0 704 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 DEFB118Q96PH6 123 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 NAP1L4Q99733 375 aaKnown RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 HTATIP2Q9BUP3 242 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 VCPKMTQ9H867 229 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 HMX1Q9NP08 348 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 FBXO2Q9UK22 296 aaPredicted RBP10.14□□□□□ -0.79
VPS39-207ENST00000563692 GJD2Q9UKL4 321 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 KCNH3Q9ULD8 1083 aa10.14□□□□□ -0.79
VPS39-207ENST00000563692 A0A1W2PRG0 241 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 SPDYE16A6NNV3 312 aaPredicted RBP10.13□□□□□ -0.79
VPS39-207ENST00000563692 WDR46O15213 610 aaKnown RBP10.13□□□□□ -0.79
VPS39-207ENST00000563692 PEX10O60683 326 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 SGPL1O95470 568 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 MCM7P33993 719 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 ATP2C1P98194 919 aaPredicted RBP10.13□□□□□ -0.79
VPS39-207ENST00000563692 TYRO3Q06418 890 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 PTGDRQ13258 359 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 Q3C1V9 767 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 EARS2Q5JPH6 523 aaKnown RBP10.13□□□□□ -0.79
VPS39-207ENST00000563692 SYDE2Q5VT97 1194 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 TYW1BQ6NUM6 668 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 SHC4Q6S5L8 630 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 BTNL9Q6UXG8 535 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 FAM160B2Q86V87 743 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 TEX2Q8IWB9 1127 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 CLIC6Q96NY7 704 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 APBA2Q99767 749 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 FUCA2Q9BTY2 467 aa10.13□□□□□ -0.79
VPS39-207ENST00000563692 AMNQ9BXJ7 453 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms