RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SP3Q02447 781 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 INF2Q27J81 1249 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 MORN1Q5T089 497 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 MCTP2Q6DN12 878 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 IL31RAQ8NI17 732 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 CRYGNQ8WXF5 182 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 TRIM47Q96LD4 638 aa18.95■□□□□ 0.62
VPS4A-202ENST00000562754 ZSCAN16Q9H4T2 348 aaPredicted RBP18.95■□□□□ 0.62
VPS4A-202ENST00000562754 SOWAHBA6NEL2 793 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 STRNO43815 780 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 COBLO75128 1261 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 SREBF1P36956 1147 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 UBXN2AP68543 259 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 MYSM1Q5VVJ2 828 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 TBCKQ8TEA7 893 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 CHAMP1Q96JM3 812 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 PXMP2Q9NR77 195 aa18.94■□□□□ 0.62
VPS4A-202ENST00000562754 MCM3APO60318 1980 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 TNPO2O14787 897 aaKnown RBP18.93■□□□□ 0.62
VPS4A-202ENST00000562754 EIF2AK2P19525 551 aaKnown RBP18.93■□□□□ 0.62
VPS4A-202ENST00000562754 PSMC4P43686 418 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 TOB1P50616 345 aaPredicted RBP18.93■□□□□ 0.62
VPS4A-202ENST00000562754 FCGRTP55899 365 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 JMYQ8N9B5 988 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 CD99L2Q8TCZ2 262 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 USP6NLQ92738 828 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 RMDN3Q96TC7 470 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 BEGAINQ9BUH8 593 aa18.93■□□□□ 0.62
VPS4A-202ENST00000562754 DDX49Q9Y6V7 483 aaKnown RBP18.93■□□□□ 0.62
VPS4A-202ENST00000562754 ALDH5A1P51649 535 aaPredicted RBP18.92■□□□□ 0.62
VPS4A-202ENST00000562754 ARHGAP4P98171 946 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 NBR1Q14596 966 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 ZNF792Q3KQV3 632 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 FOXD4L6Q3SYB3 417 aaPredicted RBP18.92■□□□□ 0.62
VPS4A-202ENST00000562754 FOXD4L3Q6VB84 417 aaPredicted RBP18.92■□□□□ 0.62
VPS4A-202ENST00000562754 ZNF296Q8WUU4 475 aaPredicted RBP18.92■□□□□ 0.62
VPS4A-202ENST00000562754 PDCD2LQ9BRP1 358 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 EHMT1Q9H9B1 1298 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 GJD2Q9UKL4 321 aa18.92■□□□□ 0.62
VPS4A-202ENST00000562754 FKTNO75072 461 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 MAP2K5Q13163 448 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 PGM5Q15124 567 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 ARHGEF16Q5VV41 709 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 NEK8Q86SG6 692 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 DNERQ8NFT8 737 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 NSUN6Q8TEA1 469 aaKnown RBP18.91■□□□□ 0.62
VPS4A-202ENST00000562754 FTOQ9C0B1 505 aaKnown RBP eCLIP18.91■□□□□ 0.62
VPS4A-202ENST00000562754 TCHHQ07283 1943 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 CASP8AP2Q9UKL3 1982 aa18.91■□□□□ 0.62
VPS4A-202ENST00000562754 ATP2B1P20020 1258 aa18.9■□□□□ 0.62
VPS4A-202ENST00000562754 KIF22Q14807 665 aa18.9■□□□□ 0.62
VPS4A-202ENST00000562754 NPLOC4Q8TAT6 608 aa18.9■□□□□ 0.62
VPS4A-202ENST00000562754 SOCS4Q8WXH5 440 aa18.9■□□□□ 0.62
VPS4A-202ENST00000562754 TNPO1Q92973 898 aaKnown RBP18.9■□□□□ 0.62
VPS4A-202ENST00000562754 NUDT12Q9BQG2 462 aa18.9■□□□□ 0.62
VPS4A-202ENST00000562754 ADD3Q9UEY8 706 aaKnown RBP18.9■□□□□ 0.62
VPS4A-202ENST00000562754 NOL7Q9UMY1 257 aaKnown RBP18.9■□□□□ 0.62
VPS4A-202ENST00000562754 TDP2O95551 362 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 CYP3A4P08684 503 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 HOXC6P09630 235 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 EDNRBP24530 442 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 TRAPPC10P48553 1259 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 DNM1Q05193 864 aaKnown RBP18.89■□□□□ 0.61
VPS4A-202ENST00000562754 LETM2Q2VYF4 491 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 RILPL1Q5EBL4 403 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 TTC38Q5R3I4 469 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 PCNX4Q63HM2 1172 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 DPP9Q86TI2 863 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 ERO1AQ96HE7 468 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 ZFP91Q96JP5 570 aaPredicted RBP18.89■□□□□ 0.61
VPS4A-202ENST00000562754 GABRQQ9UN88 632 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 PCDHB6Q9Y5E3 794 aa18.89■□□□□ 0.61
VPS4A-202ENST00000562754 NR3C2P08235 984 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 CIITAP33076 1130 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 RGS2P41220 211 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 USP11P51784 963 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 MRPS9P82933 396 aaKnown RBP18.88■□□□□ 0.61
VPS4A-202ENST00000562754 PRKCZQ05513 592 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 MORC4Q8TE76 937 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 MAML3Q96JK9 1138 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 USP28Q96RU2 1077 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 APBA2Q99767 749 aa18.88■□□□□ 0.61
VPS4A-202ENST00000562754 DIS3Q9Y2L1 958 aaKnown RBP18.88■□□□□ 0.61
VPS4A-202ENST00000562754 FAM86B1E9PN63 330 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 FAM86B2P0C5J1 330 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 MYCLP12524 364 aaPredicted RBP18.87■□□□□ 0.61
VPS4A-202ENST00000562754 CYP2B6P20813 491 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 CCND2P30279 289 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 KIAA1217Q5T5P2 1943 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 MOXD1Q6UVY6 613 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 ZNF467Q7Z7K2 595 aaPredicted RBP18.87■□□□□ 0.61
VPS4A-202ENST00000562754 VSIG10LQ86VR7 867 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 MBOAT7Q96N66 472 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 IWS1Q96ST2 819 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.87■□□□□ 0.61
VPS4A-202ENST00000562754 ATP6V1DQ9Y5K8 247 aa18.87■□□□□ 0.61
VPS4A-202ENST00000562754 IGLV3-22A0A075B6J6 115 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CYP3A7-CYP3A51PA0A087WV96 503 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 LOC102724159A0A0B4J2E5 919 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 SLC37A4O43826 429 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms