RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SHISA4Q96DD7 197 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 EPSTI1Q96J88 318 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 CDHR1Q96JP9 859 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 MPHOSPH6Q99547 160 aaKnown RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 SLF1Q9BQI6 1058 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 THAP9Q9H5L6 903 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 TTC12Q9H892 705 aaPredicted RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 KCND1Q9NSA2 647 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 GPRC5DQ9NZD1 345 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 BIN2Q9UBW5 565 aaPredicted RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 PPP1R1BQ9UD71 204 aaPredicted RBP8.43□□□□□ -1.06
VPS39-204ENST00000561818 ZNF112Q9UJU3 913 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 NFE2L3Q9Y4A8 694 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.43□□□□□ -1.06
VPS39-204ENST00000561818 ADAMTSL1Q8N6G6 1762 aa8.43□□□□□ -1.06
VPS39-204ENST00000561818 BIN1O00499 593 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 MAFGO15525 162 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 GNA14O95837 355 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 PRKAR2AP13861 404 aaKnown RBP8.42□□□□□ -1.06
VPS39-204ENST00000561818 ZNF76P36508 570 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 PTGER2P43116 358 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 FANCCQ00597 558 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 SLC35G1Q2M3R5 365 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 DPY19L2Q6NUT2 758 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 UNC13DQ70J99 1090 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 CNGA4Q8IV77 575 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 FMNL3Q8IVF7 1028 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 CCDC65Q8IXS2 484 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 MB21D1Q8N884 522 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 RETREG2Q8NC44 543 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 GIMAP8Q8ND71 665 aaPredicted RBP8.42□□□□□ -1.06
VPS39-204ENST00000561818 SLC17A8Q8NDX2 589 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 SNX29Q8TEQ0 813 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 GTF3C2Q8WUA4 911 aaPredicted RBP8.42□□□□□ -1.06
VPS39-204ENST00000561818 UPF1Q92900 1129 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS39-204ENST00000561818 COA7Q96BR5 231 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 PRIMPOLQ96LW4 560 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 TSG101Q99816 390 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 TIPINQ9BVW5 301 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 TRIM9Q9C026 710 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 TMEM39BQ9GZU3 492 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 TUFT1Q9NNX1 390 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 KCNMB3Q9NPA1 279 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 ADARB2Q9NS39 739 aaKnown RBP8.42□□□□□ -1.06
VPS39-204ENST00000561818 TMOD4Q9NZQ9 345 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 KCNG1Q9UIX4 513 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 ITIH6Q6UXX5 1313 aa8.42□□□□□ -1.06
VPS39-204ENST00000561818 DICER1Q9UPY3 1922 aaKnown RBP8.41□□□□□ -1.06
VPS39-204ENST00000561818 FAM205CA6NFA0 338 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 MEIS2O14770 477 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 ATP2A1O14983 1001 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 PPP1R12BO60237 982 aaPredicted RBP8.41□□□□□ -1.06
VPS39-204ENST00000561818 ZNF18P17022 549 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 PLCG1P19174 1290 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 RPA1P27694 616 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 SLC16A2P36021 539 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 TECP42680 631 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 TXKP42681 527 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 AFMP43652 599 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 PPP2R3AQ06190 1150 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 NCAPHQ15003 741 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 TMEM119Q4V9L6 283 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 SPECC1LQ69YQ0 1117 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 SIAH1Q8IUQ4 282 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 TXLNBQ8N3L3 684 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 ZNF280CQ8ND82 737 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 RDM1Q8NG50 284 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 RASGRP4Q8TDF6 673 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 CRYGNQ8WXF5 182 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 RIT2Q99578 217 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 POLR3CQ9BUI4 534 aaPredicted RBP8.41□□□□□ -1.06
VPS39-204ENST00000561818 NUP58Q9BVL2 599 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 SPTLC3Q9NUV7 552 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 ZNHIT6Q9NWK9 470 aaKnown RBP8.41□□□□□ -1.06
VPS39-204ENST00000561818 SEL1LQ9UBV2 794 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 FBXO40Q9UH90 709 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 PGAP2Q9UHJ9 254 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 HACL1Q9UJ83 578 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 DNM3Q9UQ16 869 aa8.41□□□□□ -1.06
VPS39-204ENST00000561818 BAZ2BQ9UIF8 2168 aaKnown RBP8.41□□□□□ -1.06
VPS39-204ENST00000561818 UBE4BO95155 1302 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 LOC102724159A0A0B4J2E5 919 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PSDA5PKW4 1024 aaPredicted RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 IQCA1LA6NCM1 817 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 LRRC10BA6NIK2 292 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PHF20L1A8MW92 1017 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 ZSCAN12O43309 604 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PPP1R11O60927 126 aaPredicted RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 GAP43P17677 238 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 HSD17B4P51659 736 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 BACE1P56817 501 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 ASIC1P78348 528 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 GRIN1Q05586 938 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 PABPC4Q13310 644 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS39-204ENST00000561818 CUL4BQ13620 913 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 ALCAMQ13740 583 aa8.4□□□□□ -1.06
VPS39-204ENST00000561818 KARSQ15046 597 aaKnown RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 PWP2Q15269 919 aaKnown RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 TSR1Q2NL82 804 aaKnown RBP8.4□□□□□ -1.06
VPS39-204ENST00000561818 NBPF9Q3BBW0 867 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms