RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 MCM2P49736 904 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 CCL23P55773 120 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 SLC30A10Q6XR72 485 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 DSCC1Q9BVC3 393 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 NKX2-4Q9H2Z4 354 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 MSRAQ9UJ68 235 aa16.34■□□□□ 0.21
LDLR-213ENST00000560502 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
LDLR-213ENST00000560502 FRMPD2Q68DX3 1309 aaPredicted RBP16.34■□□□□ 0.21
LDLR-213ENST00000560502 SNHG28P0DPA3 235 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 PDHBP11177 359 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 EDNRBP24530 442 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 PURAQ00577 322 aaKnown RBP16.33■□□□□ 0.2
LDLR-213ENST00000560502 OTOP2Q7RTS6 562 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 WDR11Q9BZH6 1224 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 POLR3EQ9NVU0 708 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 WDR19Q8NEZ3 1342 aa16.33■□□□□ 0.2
LDLR-213ENST00000560502 HSPD1P10809 573 aaKnown RBP16.32■□□□□ 0.2
LDLR-213ENST00000560502 NECTIN1Q15223 517 aa16.32■□□□□ 0.2
LDLR-213ENST00000560502 RRP12Q5JTH9 1297 aaKnown RBP16.32■□□□□ 0.2
LDLR-213ENST00000560502 ZNF589Q86UQ0 364 aaPredicted RBP16.32■□□□□ 0.2
LDLR-213ENST00000560502 TM6SF1Q9BZW5 370 aa16.32■□□□□ 0.2
LDLR-213ENST00000560502 GPCPD1Q9NPB8 672 aa16.32■□□□□ 0.2
LDLR-213ENST00000560502 TRMT13Q9NUP7 481 aaKnown RBP16.32■□□□□ 0.2
LDLR-213ENST00000560502 PNMA2Q9UL42 364 aa16.32■□□□□ 0.2
LDLR-213ENST00000560502 BDP1A6H8Y1 2624 aa16.32■□□□□ 0.2
LDLR-213ENST00000560502 TNKSO95271 1327 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 PTPDC1A2A3K4 754 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 CPT1AP50416 773 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 ZNF543Q08ER8 600 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 KRT32Q14532 448 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 TSGA10IPQ3SY00 556 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 RPUSD2Q8IZ73 545 aaKnown RBP16.31■□□□□ 0.2
LDLR-213ENST00000560502 ATXN2LQ8WWM7 1075 aaKnown RBP16.31■□□□□ 0.2
LDLR-213ENST00000560502 SCLYQ96I15 445 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 SLC28A3Q9HAS3 691 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 TOMM22Q9NS69 142 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 THEGQ9P2T0 379 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 RBM8AQ9Y5S9 174 aaKnown RBP16.31■□□□□ 0.2
LDLR-213ENST00000560502 TET1Q8NFU7 2136 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 KIAA1217Q5T5P2 1943 aa16.31■□□□□ 0.2
LDLR-213ENST00000560502 MYH6P13533 1939 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 PTPRSQ13332 1948 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 PFKMP08237 780 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 SUPT20HL2P0C7V6 817 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 PCP11498 1178 aaKnown RBP16.3■□□□□ 0.2
LDLR-213ENST00000560502 CYP2C9P11712 490 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 CALML3P27482 149 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 RABGGTBP53611 331 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 RPS6P62753 249 aaKnown RBP16.3■□□□□ 0.2
LDLR-213ENST00000560502 PTH1RQ03431 593 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 RNF207Q6ZRF8 634 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 TBC1D10CQ8IV04 446 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 OR6J1Q8NGC5 347 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 PPM1EQ8WY54 764 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 TTC14Q96N46 770 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 MTG1Q9BT17 334 aaPredicted RBP16.3■□□□□ 0.2
LDLR-213ENST00000560502 PCDHA11Q9Y5I1 949 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 SLC4A7Q9Y6M7 1214 aa16.3■□□□□ 0.2
LDLR-213ENST00000560502 MUC3AQ02505 3323 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 PRRC2BQ5JSZ5 2229 aaKnown RBP16.29■□□□□ 0.2
LDLR-213ENST00000560502 A6NJR5 290 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 K7ELQ4 463 aaPredicted RBP16.29■□□□□ 0.2
LDLR-213ENST00000560502 NKRFO15226 690 aaKnown RBP eCLIP16.29■□□□□ 0.2
LDLR-213ENST00000560502 MYL3P08590 195 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 HAND2P61296 217 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 TTLL4Q14679 1199 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 DNERQ8NFT8 737 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 ASB2Q96Q27 587 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 CTNNA3Q9UI47 895 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 SNX14Q9Y5W7 946 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 TRIP12Q14669 1992 aaPredicted RBP16.29■□□□□ 0.2
LDLR-213ENST00000560502 TRANK1O15050 2925 aa16.29■□□□□ 0.2
LDLR-213ENST00000560502 TNFRSF10AO00220 468 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 MYOGP15173 224 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 PSMA5P28066 241 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 PDE4DQ08499 809 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 PPP2R5BQ15173 497 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 PPP2R2DQ66LE6 453 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 CREB3L3Q68CJ9 461 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 NFRKBQ6P4R8 1299 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 SCFD2Q8WU76 684 aa16.28■□□□□ 0.2
LDLR-213ENST00000560502 NEDD4P46934 1319 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 PITPNM1O00562 1244 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 KPNA6O60684 536 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 ATP2A2P16615 1042 aaKnown RBP16.27■□□□□ 0.2
LDLR-213ENST00000560502 IGFBP4P22692 258 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 RFC2P35250 354 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 PTPN11Q06124 597 aaPredicted RBP16.27■□□□□ 0.2
LDLR-213ENST00000560502 NBPF20Q3BBV1 942 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 MFSD6Q6ZSS7 791 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 RGS22Q8NE09 1264 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 COPS5Q92905 334 aa16.27■□□□□ 0.2
LDLR-213ENST00000560502 ZBBXA8MT70 800 aa16.26■□□□□ 0.19
LDLR-213ENST00000560502 SLC27A2O14975 620 aa16.26■□□□□ 0.19
LDLR-213ENST00000560502 ARIH2O95376 493 aa16.26■□□□□ 0.19
LDLR-213ENST00000560502 CCDC85BQ15834 202 aaPredicted RBP16.26■□□□□ 0.19
LDLR-213ENST00000560502 BRDTQ58F21 947 aaPredicted RBP16.26■□□□□ 0.19
LDLR-213ENST00000560502 GPATCH4Q5T3I0 446 aaKnown RBP16.26■□□□□ 0.19
LDLR-213ENST00000560502 MPHOSPH6Q99547 160 aaKnown RBP16.26■□□□□ 0.19
LDLR-213ENST00000560502 MAF1Q9H063 256 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms