RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HMGN5P82970 282 aaKnown RBP25■■□□□ 1.59
SNX1-210ENST00000560260 CACNB2Q08289 660 aaPredicted RBP25■■□□□ 1.59
SNX1-210ENST00000560260 RASGRP4Q8TDF6 673 aa25■■□□□ 1.59
SNX1-210ENST00000560260 MORC4Q8TE76 937 aa25■■□□□ 1.59
SNX1-210ENST00000560260 WASF1Q92558 559 aa25■■□□□ 1.59
SNX1-210ENST00000560260 PGBD1Q96JS3 809 aa25■■□□□ 1.59
SNX1-210ENST00000560260 PHF20Q9BVI0 1012 aa25■■□□□ 1.59
SNX1-210ENST00000560260 KATNBL1Q9H079 304 aa25■■□□□ 1.59
SNX1-210ENST00000560260 CDKN2AIPQ9NXV6 580 aaPredicted RBP25■■□□□ 1.59
SNX1-210ENST00000560260 ADD3Q9UEY8 706 aaKnown RBP25■■□□□ 1.59
SNX1-210ENST00000560260 PRKAR2AP13861 404 aaKnown RBP24.99■■□□□ 1.59
SNX1-210ENST00000560260 MRPL12P52815 198 aaKnown RBP24.99■■□□□ 1.59
SNX1-210ENST00000560260 NLRP5P59047 1200 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 UBXN2AP68543 259 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 PRAMEF19Q5SWL8 479 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 MFSD14CQ5VZR4 134 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 HSCBQ8IWL3 235 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 MSL3Q8N5Y2 521 aaKnown RBP24.99■■□□□ 1.59
SNX1-210ENST00000560260 ZNF333Q96JL9 665 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 PDCD2LQ9BRP1 358 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 C6orf50Q9HD87 102 aa24.99■■□□□ 1.59
SNX1-210ENST00000560260 BIN2Q9UBW5 565 aaPredicted RBP24.99■■□□□ 1.59
SNX1-210ENST00000560260 CYBAP13498 195 aa24.98■■□□□ 1.59
SNX1-210ENST00000560260 MTFR1Q15390 333 aa24.98■■□□□ 1.59
SNX1-210ENST00000560260 NSUN6Q8TEA1 469 aaKnown RBP24.98■■□□□ 1.59
SNX1-210ENST00000560260 BRCA2P51587 3418 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 ASB14A6NK59 587 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 M0R2N6 131 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 GJB2P29033 226 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 ARHGEF16Q5VV41 709 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 JAKMIP3Q5VZ66 844 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 FAM177A1Q8N128 213 aaPredicted RBP24.97■■□□□ 1.59
SNX1-210ENST00000560260 DAGLBQ8NCG7 672 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 PCDHA6Q9UN73 950 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 PCDHA4Q9UN74 947 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 PCDHA8Q9Y5H6 950 aa24.97■■□□□ 1.59
SNX1-210ENST00000560260 MYCP01106 439 aaPredicted RBP24.96■■□□□ 1.59
SNX1-210ENST00000560260 GNA11P29992 359 aa24.96■■□□□ 1.59
SNX1-210ENST00000560260 CCND3P30281 292 aaPredicted RBP24.96■■□□□ 1.59
SNX1-210ENST00000560260 PGM5Q15124 567 aa24.96■■□□□ 1.59
SNX1-210ENST00000560260 TEX2Q8IWB9 1127 aa24.96■■□□□ 1.59
SNX1-210ENST00000560260 REXO1Q8N1G1 1221 aaKnown RBP24.96■■□□□ 1.59
SNX1-210ENST00000560260 ANO3Q9BYT9 981 aa24.96■■□□□ 1.59
SNX1-210ENST00000560260 GLT8D2Q9H1C3 349 aa24.96■■□□□ 1.59
SNX1-210ENST00000560260 LOC102724159A0A0B4J2E5 919 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 ZNF865P0CJ78 1059 aaPredicted RBP24.95■■□□□ 1.58
SNX1-210ENST00000560260 GUCY1B3Q02153 619 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 AP3B2Q13367 1082 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 PWP2Q15269 919 aaKnown RBP24.95■■□□□ 1.58
SNX1-210ENST00000560260 KRT40Q6A162 431 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 FBXO16Q8IX29 292 aaPredicted RBP24.95■■□□□ 1.58
SNX1-210ENST00000560260 BLIDQ8IZY5 108 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 FAM184AQ8NB25 1140 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 OXER1Q8TDS5 423 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 ZFP91Q96JP5 570 aaPredicted RBP24.95■■□□□ 1.58
SNX1-210ENST00000560260 UNC93B1Q9H1C4 597 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 FOXD4L1Q9NU39 408 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 SMC3Q9UQE7 1217 aa24.95■■□□□ 1.58
SNX1-210ENST00000560260 NR3C2P08235 984 aa24.94■■□□□ 1.58
SNX1-210ENST00000560260 EEPD1Q7L9B9 569 aa24.94■■□□□ 1.58
SNX1-210ENST00000560260 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.94■■□□□ 1.58
SNX1-210ENST00000560260 SPDYE3A6NKU9 549 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 MMP1P03956 469 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 XBP1P17861 261 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 MRPS9P82933 396 aaKnown RBP24.93■■□□□ 1.58
SNX1-210ENST00000560260 PDE4DQ08499 809 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 C8orf76Q96K31 380 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 IWS1Q96ST2 819 aa24.93■■□□□ 1.58
SNX1-210ENST00000560260 ZHX1Q9UKY1 873 aaPredicted RBP24.93■■□□□ 1.58
SNX1-210ENST00000560260 CCL5P13501 91 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 ACVR2BQ13705 512 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 GALNT17Q6IS24 598 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 VSIG10LQ86VR7 867 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 BICD2Q8TD16 824 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 TNFRSF25Q93038 417 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 INTS4Q96HW7 963 aaKnown RBP24.92■■□□□ 1.58
SNX1-210ENST00000560260 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.92■■□□□ 1.58
SNX1-210ENST00000560260 ABHD16BQ9H3Z7 469 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 PDGFCQ9NRA1 345 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 NRBP1Q9UHY1 535 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 CNPY2Q9Y2B0 182 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 FRMPD3Q5JV73 1810 aa24.92■■□□□ 1.58
SNX1-210ENST00000560260 MYH7BA7E2Y1 1941 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 ADCY6O43306 1168 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 RGS20O76081 388 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 FOSP01100 380 aaPredicted RBP24.91■■□□□ 1.58
SNX1-210ENST00000560260 MYCLP12524 364 aaPredicted RBP24.91■■□□□ 1.58
SNX1-210ENST00000560260 NR5A1Q13285 461 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 TAPT1Q6NXT6 567 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 CRYGNQ8WXF5 182 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 VTA1Q9NP79 307 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 KIAA1217Q5T5P2 1943 aa24.91■■□□□ 1.58
SNX1-210ENST00000560260 EDIL3O43854 480 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 CCND2P30279 289 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 SREBF1P36956 1147 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 TRIM29Q14134 588 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 EARS2Q5JPH6 523 aaKnown RBP24.9■■□□□ 1.58
SNX1-210ENST00000560260 TMEM63BQ5T3F8 832 aa24.9■■□□□ 1.58
SNX1-210ENST00000560260 DIS3L2Q8IYB7 885 aaKnown RBP24.9■■□□□ 1.58
SNX1-210ENST00000560260 TNS4Q8IZW8 715 aa24.9■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms