RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	FAM13A	O94988	1023 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	HOXB7	P09629	217 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	PARP1	P09874	1014 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	HNRNPH1	P31943	449 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	HSPA9	P38646	679 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	AP2B1	P63010	937 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	OGFOD1	Q8N543	542 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	ENOX1	Q8TC92	643 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	CLMN	Q96JQ2	1002 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	GPR101	Q96P66	508 aa	Predicted RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	GSDMA	Q96QA5	445 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	IL25	Q9H293	177 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	NDE1	Q9NXR1	346 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	DKK3	Q9UBP4	350 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	L1RE1	Q9UN81	338 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	ARHGEF40	Q8TER5	1519 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	SHROOM2	Q13796	1616 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	PAPOLA	P51003	745 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	TOGARAM2	Q6ZUX3	1019 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	SYT2	Q8N9I0	419 aa	Predicted RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	TTC16	Q8NEE8	873 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	NUDCD1	Q96RS6	583 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	KRT12	Q99456	494 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	TAB2	Q9NYJ8	693 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	MAD1L1	Q9Y6D9	718 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	SBNO1	A3KN83	1393 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	ANXA1	P04083	346 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	ABCD1	P33897	745 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	PDE6B	P35913	854 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	HAND2	P61296	217 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	VSNL1	P62760	191 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	NXN	Q6DKJ4	435 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	DTHD1	Q6ZMT9	781 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	DDX42	Q86XP3	938 aa	Known RBP eCLIP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	PHKB	Q93100	1093 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	EPB41L5	Q9HCM4	733 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	KRT82	Q9NSB4	513 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	GID8	Q9NWU2	228 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	YY1	P25490	414 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	SERPINB1	P30740	379 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	PLCB4	Q15147	1175 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	HDDC2	Q7Z4H3	204 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRMT44	Q8IYL2	757 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	MSL3	Q8N5Y2	521 aa	Known RBP	10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	TUBGCP3	Q96CW5	907 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	CARD9	Q9H257	536 aa		10.5	□□□□□ -0.73
TRPM1-208	ENST00000558768	KIF1B	O60333	1816 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	SETBP1	Q9Y6X0	1596 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	SUPT3H	O75486	399 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRIM16	O95361	564 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	CCND1	P24385	295 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	SERPINB4	P48594	390 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ARHGAP44	Q17R89	818 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TCP11X2	Q5H9J9	407 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	SFMBT2	Q5VUG0	894 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	CNNM4	Q6P4Q7	775 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRIM65	Q6PJ69	517 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ENGASE	Q8NFI3	743 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ST13P5	Q8NFI4	369 aa	Predicted RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	EAF2	Q96CJ1	260 aa	Predicted RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRIM56	Q9BRZ2	755 aa	Known RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRIM55	Q9BYV6	548 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	CNNM2	Q9H8M5	875 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ABCA6	Q8N139	1617 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	PPP6R2	O75170	966 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	MAN1A1	P33908	653 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	PLCD1	P51178	756 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TSGA10IP	Q3SY00	556 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TMEM154	Q6P9G4	183 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRAF7	Q6Q0C0	670 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	KCNB2	Q92953	911 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	KRT23	Q9C075	422 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	RGL1	Q9NZL6	768 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TLK1	Q9UKI8	766 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	PASK	Q96RG2	1323 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TET3	O43151	1660 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	MAP2K7	O14733	419 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	POLR2D	O15514	142 aa	Known RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	GSTA2	P09210	222 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	CARS	P49589	748 aa	Known RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	DAB2	P98082	770 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	MED21	Q13503	144 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	METTL24	Q5JXM2	366 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	LIN9	Q5TKA1	542 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	HORMAD1	Q86X24	394 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ICA1L	Q8NDH6	482 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TRIM63	Q969Q1	353 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	DSCC1	Q9BVC3	393 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	TMEM60	Q9H2L4	133 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	PDP2	Q9P2J9	529 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	ADCY9	O60503	1353 aa		10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
TRPM1-208	ENST00000558768	SOWAHD	A6NJG2	315 aa		10.48	□□□□□ -0.73
TRPM1-208	ENST00000558768	MME	P08473	750 aa		10.48	□□□□□ -0.73
TRPM1-208	ENST00000558768	HSPA8	P11142	646 aa	Known RBP	10.48	□□□□□ -0.73
TRPM1-208	ENST00000558768	ATP5J	P18859	108 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms