RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GCFC2P16383 781 aaKnown RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 ASIC1P78348 528 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CBX1P83916 185 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 GABPB1Q06547 395 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 BMS1Q14692 1282 aaKnown RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 NAA30Q147X3 362 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CALCRLQ16602 461 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TXNRD1Q16881 649 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 ERCC6LQ2NKX8 1250 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 UTP14CQ5TAP6 766 aaKnown RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 HHIPL2Q6UWX4 724 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 GPR161Q8N6U8 529 aaKnown RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 MB21D1Q8N884 522 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CEP112Q8N8E3 955 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TBCKQ8TEA7 893 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 GOLGA1Q92805 767 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 P2RX5Q93086 422 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CCDC17Q96LX7 622 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 PSMD1Q99460 953 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CARD6Q9BX69 1037 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TRIM9Q9C026 710 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 EHD4Q9H223 541 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 VPS16Q9H269 839 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 SERPINB13Q9UIV8 391 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 V9GYY5 206 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 ABCB11O95342 1321 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 PNMA6FA0A0J9YX94 578 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 PVALEFA0A1B0GWK0 134 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 USP17L5A8MUK1 530 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 PDE6BP35913 854 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 FXR1P51114 621 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 FKBP1AP62942 108 aaKnown RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 FAM193AP78312 1265 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 PDIA5Q14554 519 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 SEPT2Q15019 361 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 MCTP2Q6DN12 878 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TTI2Q6NXR4 508 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 FOXR2Q6PJQ5 311 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TMCO3Q6UWJ1 677 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 DPP8Q6V1X1 898 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 RAD9BQ6WBX8 426 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 SV2BQ7L1I2 683 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CREBRFQ8IUR6 639 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 NLGN1Q8N2Q7 840 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 EHBP1Q8NDI1 1231 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 FLAD1Q8NFF5 587 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 CPLX3Q8WVH0 158 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 RABGGTAQ92696 567 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 TEKT1Q969V4 418 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 DESI2Q9BSY9 194 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 RIC8AQ9NPQ8 531 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.13□□□□□ -1.11
VPS13C-206ENST00000558338 IVNS1ABPQ9Y6Y0 642 aa8.13□□□□□ -1.11
VPS13C-206ENST00000558338 MYH4Q9Y623 1939 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 KDM3AQ9Y4C1 1321 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 CTAGE9A4FU28 777 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 PP2D1A8MPX8 630 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 G3V3G9 751 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 GPR37O15354 613 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 CDC25AP30304 524 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 KRT9P35527 623 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 MRPL12P52815 198 aaKnown RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 ZNF543Q08ER8 600 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 PICALMQ13492 652 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 FKBP15Q5T1M5 1219 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 PPP4R3AQ6IN85 833 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 ZNF662Q6ZS27 426 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 UNC13DQ70J99 1090 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 CSGALNACT2Q8N6G5 542 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 OR8K1Q8NGG5 319 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 CUL5Q93034 780 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 PCMTD1Q96MG8 357 aaPredicted RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 MTMR9Q96QG7 549 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 WDR24Q96S15 920 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 DNAJC7Q99615 494 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 MRPL44Q9H9J2 332 aaKnown RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 VAT1LQ9HCJ6 419 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 ZNHIT6Q9NWK9 470 aaKnown RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 KIAA1522Q9P206 1035 aaPredicted RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 LRWD1Q9UFC0 647 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 CAPN11Q9UMQ6 739 aa8.12□□□□□ -1.11
VPS13C-206ENST00000558338 LUC7L2Q9Y383 392 aaKnown RBP8.12□□□□□ -1.11
VPS13C-206ENST00000558338 FRMPD2Q68DX3 1309 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 IPO7O95373 1038 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 TUBBP07437 444 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 SRGNP10124 158 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 AKR1B1P15121 316 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 CYLC1P35663 651 aaPredicted RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 TECP42680 631 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 KRT83P78385 493 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 PSMD2Q13200 908 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 MTF1Q14872 753 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 AMHR2Q16671 573 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 FIGNQ5HY92 759 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 KRT79Q5XKE5 535 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 KRT27Q7Z3Y8 459 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 SLC51AQ86UW1 340 aa8.11□□□□□ -1.11
VPS13C-206ENST00000558338 LRRC47Q8N1G4 583 aaKnown RBP8.11□□□□□ -1.11
VPS13C-206ENST00000558338 DCAF4Q8WV16 495 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms