RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CACNB1Q02641 598 aaPredicted RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 C2orf54Q08AI8 447 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 RAD51AP2Q09MP3 1159 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 EZH2Q15910 746 aaKnown RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 SHROOM1Q2M3G4 852 aaPredicted RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 DDX4Q9NQI0 724 aaKnown RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 C6orf229H3BNL8 230 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 MYL1P05976 194 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 GTF2IP78347 998 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 DPP8Q6V1X1 898 aaPredicted RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 SV2BQ7L1I2 683 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 HDAC7Q8WUI4 952 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 CALML4Q96GE6 196 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 DNAJC5Q9H3Z4 198 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 ZNHIT6Q9NWK9 470 aaKnown RBP14.36□□□□□ -0.11
LDLR-207ENST00000558013 SALL4Q9UJQ4 1053 aa14.36□□□□□ -0.11
LDLR-207ENST00000558013 RAD21O60216 631 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 ERLIN1O75477 346 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 USP14P54578 494 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 CCDC96Q2M329 555 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 PAPD7Q5XG87 772 aaKnown RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 CENPPQ6IPU0 288 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 COG1Q8WTW3 980 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 CCDC42Q96M95 316 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 DDX60LQ5H9U9 1706 aaKnown RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 BICDL2A1A5D9 508 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 KRT86O43790 486 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 KRT83P78385 493 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 TUBB2AQ13885 445 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 ZSCAN29Q8IWY8 852 aaPredicted RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 LARP4BQ92615 738 aaKnown RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 DDX12PQ92771 950 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 LZTS2Q9BRK4 669 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 TUBB2BQ9BVA1 445 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 NDST4Q9H3R1 872 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 SBF2Q86WG5 1849 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 MOCS3O95396 460 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 CYLC1P35663 651 aaPredicted RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 EIF4A3P38919 411 aaKnown RBP14.35□□□□□ -0.11
LDLR-207ENST00000558013 FKBP15Q5T1M5 1219 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 FOXR1Q6PIV2 292 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 SNX29Q8TEQ0 813 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 RIOX1Q9H6W3 641 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 MTMR4Q9NYA4 1195 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 GGA1Q9UJY5 639 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 SIK3Q9Y2K2 1263 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 DAGLAQ9Y4D2 1042 aa14.35□□□□□ -0.11
LDLR-207ENST00000558013 UTRNP46939 3433 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 EIF3CLB5ME19 914 aaKnown RBP14.34□□□□□ -0.11
LDLR-207ENST00000558013 SSBP05455 408 aaKnown RBP eCLIP14.34□□□□□ -0.11
LDLR-207ENST00000558013 MATR3P43243 847 aaKnown RBP eCLIP14.34□□□□□ -0.11
LDLR-207ENST00000558013 TNNT3P45378 269 aaPredicted RBP14.34□□□□□ -0.11
LDLR-207ENST00000558013 SCNN1DP51172 638 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 VWA3BQ502W6 1294 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 CNNM4Q6P4Q7 775 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 KCTD1Q719H9 257 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 RRAGAQ7L523 313 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 TMC4Q7Z404 712 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 CAGE1Q8TC20 777 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 EIF3CQ99613 913 aaKnown RBP14.34□□□□□ -0.11
LDLR-207ENST00000558013 CUEDC2Q9H467 287 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 NPHP3-ACAD11A0A0J9YXS1 232 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 LRRC53A6NM62 1247 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 FAM196BA6NMK8 535 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 POTEB2H3BUK9 544 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 NCK2O43639 380 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 KCTD19Q17RG1 926 aaPredicted RBP14.34□□□□□ -0.11
LDLR-207ENST00000558013 CDK5RAP3Q96JB5 506 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 ERGIC2Q96RQ1 377 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 PLEKHA4Q9H4M7 779 aa14.34□□□□□ -0.11
LDLR-207ENST00000558013 ZSCAN26Q16670 478 aa14.33□□□□□ -0.11
LDLR-207ENST00000558013 TBC1D16Q8TBP0 767 aa14.33□□□□□ -0.11
LDLR-207ENST00000558013 NOC3LQ8WTT2 800 aaKnown RBP14.33□□□□□ -0.11
LDLR-207ENST00000558013 CCDC47Q96A33 483 aaKnown RBP14.33□□□□□ -0.11
LDLR-207ENST00000558013 CRACR2AQ9BSW2 395 aa14.33□□□□□ -0.11
LDLR-207ENST00000558013 ZNF287Q9HBT7 754 aa14.33□□□□□ -0.11
LDLR-207ENST00000558013 NLRC4Q9NPP4 1024 aa14.33□□□□□ -0.11
LDLR-207ENST00000558013 IPO7O95373 1038 aaKnown RBP14.33□□□□□ -0.12
LDLR-207ENST00000558013 IL1R1P14778 569 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 ADCY7P51828 1080 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 AMPD3Q01432 767 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 KIF5AQ12840 1032 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 ADGRF4Q8IZF3 695 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 IFIH1Q9BYX4 1025 aaKnown RBP14.33□□□□□ -0.12
LDLR-207ENST00000558013 JMJD4Q9H9V9 463 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 POLD4Q9HCU8 107 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 PLAGL2Q9UPG8 496 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 MAST2Q6P0Q8 1798 aa14.33□□□□□ -0.12
LDLR-207ENST00000558013 DNA2P51530 1060 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 GFPT1Q06210 699 aaPredicted RBP14.32□□□□□ -0.12
LDLR-207ENST00000558013 ENOX2Q16206 610 aaKnown RBP14.32□□□□□ -0.12
LDLR-207ENST00000558013 WDR93Q6P2C0 686 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 NFRKBQ6P4R8 1299 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 HAS1Q92839 578 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 SECISBP2LQ93073 1101 aaKnown RBP14.32□□□□□ -0.12
LDLR-207ENST00000558013 NUP58Q9BVL2 599 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 TANGO6Q9C0B7 1094 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 CALCOCO1Q9P1Z2 691 aa14.32□□□□□ -0.12
LDLR-207ENST00000558013 LCMT1Q9UIC8 334 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms