RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 WDR5P61964 334 aaKnown RBP9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 DEFB103AP81534 67 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 PDE4BQ07343 736 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 CCDC96Q2M329 555 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 TCTN1Q2MV58 587 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 TTBK2Q6IQ55 1244 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 RCSD1Q6JBY9 416 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 NFRKBQ6P4R8 1299 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 CTAGE1Q96RT6 745 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 FTOQ9C0B1 505 aaKnown RBP eCLIP9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 INCENPQ9NQS7 918 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 TECTAO75443 2155 aa9.68□□□□□ -0.86
CCDC88C-214ENST00000557507 BAZ2BQ9UIF8 2168 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 PTPDC1A2A3K4 754 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 BAIAP3O94812 1187 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 ZFYP08048 801 aaPredicted RBP9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 MS4A1P11836 297 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 CTDSPL2Q05D32 466 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 GPNMBQ14956 572 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 PPP2R5BQ15173 497 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 PPP4R3CPQ6ZMV5 832 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 RETREG2Q8NC44 543 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 CLEC4DQ8WXI8 215 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 DHX38Q92620 1227 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 NAPBQ9H115 298 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 ADD3Q9UEY8 706 aaKnown RBP9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 MTUS1Q9ULD2 1270 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 C5orf42Q9H799 3197 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 WDFY4Q6ZS81 3184 aa9.67□□□□□ -0.86
CCDC88C-214ENST00000557507 ZDBF2Q9HCK1 2354 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 FRMPD2Q68DX3 1309 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 RAD50Q92878 1312 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 LOC102724159A0A0B4J2E5 919 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 A6NJR5 290 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 TSPY2A6NKD2 308 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 KIF28PB7ZC32 967 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 PI4K2BG5E9Z4 385 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 ARIH2O95376 493 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 SLC3A2P08195 630 aaKnown RBP9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 EDNRBP24530 442 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 CALML3P27482 149 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 KCNJ6P48051 423 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 NOVP48745 357 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 BFSP2Q13515 415 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 PWP2Q15269 919 aaKnown RBP9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 SYDE2Q5VT97 1194 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 DCAF4Q8WV16 495 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 NACAP1Q9BZK3 213 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 UBE2ZQ9H832 354 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 GPHNQ9NQX3 736 aaPredicted RBP9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 KMT2EQ8IZD2 1858 aa9.66□□□□□ -0.86
CCDC88C-214ENST00000557507 TRIOO75962 3097 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 LINC01553A4QN01 128 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 NKRFO15226 690 aaKnown RBP eCLIP9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 NBNO60934 754 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 IL9P15248 144 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 CHMP4BP1P59074 171 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 RPS6P62753 249 aaKnown RBP9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 PTPN11Q06124 597 aaPredicted RBP9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 PDE4DQ08499 809 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 PTGISQ16647 500 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 PPP4R3BQ5MIZ7 849 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 ZMYM1Q5SVZ6 1142 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 ERICH6BQ5W0A0 696 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 GDF6Q6KF10 455 aaPredicted RBP9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 BTNL9Q6UXG8 535 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 RNF207Q6ZRF8 634 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 LRRC8DQ7L1W4 858 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 ALYREFQ86V81 257 aaKnown RBP9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 AFAP1L1Q8TED9 768 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 SCFD2Q8WU76 684 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 GPATCH3Q96I76 525 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 SUGCTQ9HAC7 445 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 NOD1Q9Y239 953 aa9.65□□□□□ -0.86
CCDC88C-214ENST00000557507 COL4A6Q14031 1691 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 CACNA1HO95180 2353 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 RANBP6O60518 1105 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 KPNA6O60684 536 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 GJB5O95377 273 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 CXCL10P02778 98 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 MMP3P08254 477 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 TXNP10599 105 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 SELPP16109 830 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 ERVK-21P61565 698 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 RBL2Q08999 1139 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 LRRFIP1Q32MZ4 808 aaKnown RBP9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 BRDTQ58F21 947 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 C20orf194Q5TEA3 1177 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 VPS53Q5VIR6 699 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 CNKSR3Q6P9H4 555 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 FAM178BQ8IXR5 827 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 CAGE1Q8TC20 777 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 PI4K2BQ8TCG2 481 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 OTUD7AQ8TE49 926 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 KAT2BQ92831 832 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 FSD1Q9BTV5 496 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 GPCPD1Q9NPB8 672 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 LMCD1Q9NZU5 365 aa9.64□□□□□ -0.87
CCDC88C-214ENST00000557507 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-214ENST00000557507 PRR33A8MZF0 331 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms