RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 BMP3P12645 472 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 ALAS1P13196 640 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 MLLT3P42568 568 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 SNAP25P60880 206 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 WDR5P61964 334 aaKnown RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 IKQ13123 557 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 MUM1L1Q5H9M0 696 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 PTCRAQ6ISU1 281 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 CLASRPQ8N2M8 674 aaKnown RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 CEP95Q96GE4 821 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 TRERF1Q96PN7 1200 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 MTG1Q9BT17 334 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 TMEM121BQ9BXQ6 578 aaPredicted RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 PUS7LQ9H0K6 701 aaKnown RBP11.08□□□□□ -0.64
SYNE2-224ENST00000557024 SUGCTQ9HAC7 445 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 VTA1Q9NP79 307 aa11.08□□□□□ -0.64
SYNE2-224ENST00000557024 MCM3APO60318 1980 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 MINDY4BA8MYZ0 360 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 DCXO43602 365 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 PRDM1O75626 825 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 FDX1P10109 184 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 CPT1AP50416 773 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 STAT2P52630 851 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 DEFB103AP81534 67 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 BFSP2Q13515 415 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 UBE3CQ15386 1083 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 DUSP28Q4G0W2 176 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 HSP90AB4PQ58FF6 505 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 SLFN13Q68D06 897 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 NSMFQ6X4W1 530 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 GMCL1P1Q8NEA9 526 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 WDR11Q9BZH6 1224 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 MTMR4Q9NYA4 1195 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 CYP39A1Q9NYL5 469 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 NOD1Q9Y239 953 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 WDFY4Q6ZS81 3184 aa11.07□□□□□ -0.64
SYNE2-224ENST00000557024 MYH8P13535 1937 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 BAZ2AQ9UIF9 1905 aaKnown RBP11.06□□□□□ -0.64
SYNE2-224ENST00000557024 COL4A4P53420 1690 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-224ENST00000557024 GRXCR2A6NFK2 248 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 RBAK-RBAKDNI3L0D1 243 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 TTLL1O95922 423 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 CHMP4BP1P59074 171 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 FOXK1P85037 733 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 TKFCQ3LXA3 575 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 SBK1Q52WX2 424 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 NFRKBQ6P4R8 1299 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 RPAP2Q8IXW5 612 aaPredicted RBP11.06□□□□□ -0.64
SYNE2-224ENST00000557024 PLPP6Q8IY26 295 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 OR6J1Q8NGC5 347 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 MORC4Q8TE76 937 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 ANKS1AQ92625 1134 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 MKL1Q969V6 931 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 KIF1BPQ96EK5 621 aa11.06□□□□□ -0.64
SYNE2-224ENST00000557024 TGS1Q96RS0 853 aaKnown RBP11.06□□□□□ -0.64
SYNE2-224ENST00000557024 LINC01553A4QN01 128 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 POTEMA6NI47 508 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 GSG1L2A8MUP6 293 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 H3BQ06 376 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-224ENST00000557024 ERVK-21P61565 698 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 IRX6P78412 446 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-224ENST00000557024 SMYD5Q6GMV2 418 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 FAM160B2Q86V87 743 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 ZNF444Q8N0Y2 327 aaPredicted RBP11.05□□□□□ -0.64
SYNE2-224ENST00000557024 PANK1Q8TE04 598 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 CHURC1Q8WUH1 139 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 STAG1Q8WVM7 1258 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 STRBPQ96SI9 672 aaKnown RBP11.05□□□□□ -0.64
SYNE2-224ENST00000557024 CRBNQ96SW2 442 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 RAD9AQ99638 391 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 HAUS7Q99871 368 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 KCNH6Q9H252 994 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 CHMP4BQ9H444 224 aaKnown RBP11.05□□□□□ -0.64
SYNE2-224ENST00000557024 SYNPO2Q9UMS6 1093 aa11.05□□□□□ -0.64
SYNE2-224ENST00000557024 GREB1LQ9C091 1923 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-224ENST00000557024 POTEB3A0JP26 581 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 GJB5O95377 273 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 ATP5JP18859 108 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 MCCP23508 829 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 SLC1A4P43007 532 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 ALDH5A1P51649 535 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-224ENST00000557024 GPNMBQ14956 572 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 PTGISQ16647 500 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 TCTN1Q2MV58 587 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 BRDTQ58F21 947 aaPredicted RBP11.04□□□□□ -0.64
SYNE2-224ENST00000557024 FAM117BQ6P1L5 589 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 POTEBQ6S5H4 581 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 HFE2Q6ZVN8 426 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 KCTD1Q719H9 257 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 GMCL1Q96IK5 515 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 PHOX2BQ99453 314 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 CCPG1Q9ULG6 757 aa11.04□□□□□ -0.64
SYNE2-224ENST00000557024 BRWD1Q9NSI6 2320 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 SCN5AQ14524 2016 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 TSPY3P0CV98 308 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 TSPY8P0CW00 308 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 SELPP16109 830 aa11.03□□□□□ -0.64
SYNE2-224ENST00000557024 PTPN11Q06124 597 aaPredicted RBP11.03□□□□□ -0.64
SYNE2-224ENST00000557024 BAATQ14032 418 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms