RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 MYCLP12524 364 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 AKR1A1P14550 325 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 ADCY7P51828 1080 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 PPP1R18Q6NYC8 613 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 FBXO16Q8IX29 292 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 BARHL2Q9NY43 387 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 FAM184BQ9ULE4 1060 aa13.17□□□□□ -0.3
CCDC88C-212ENST00000556767 KIAA0100Q14667 2235 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 LOC102724159A0A0B4J2E5 919 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 SPDYE3A6NKU9 549 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 DTNBO60941 627 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 DEXIO95424 95 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 RARBP10826 455 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 GHRHRQ02643 423 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 PWP2Q15269 919 aaKnown RBP13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 PKN1Q16512 942 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 UBE2SQ16763 222 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 CCDC144BQ3MJ40 725 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 IFFO2Q5TF58 517 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 TYW1BQ6NUM6 668 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 CCDC12Q8WUD4 166 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 GTF3C6Q969F1 213 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 ZSCAN31Q96LW9 406 aaPredicted RBP13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 VTA1Q9NP79 307 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 PXMP2Q9NR77 195 aa13.16□□□□□ -0.3
CCDC88C-212ENST00000556767 PIK3CDO00329 1044 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 MEIS2O14770 477 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 NR3C2P08235 984 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 ADCYAP1R1P41586 468 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 STXBP2Q15833 593 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 LHX8Q68G74 356 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 SEPT14Q6ZU15 432 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 CCDC83Q8IWF9 413 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 CCDC148Q8NFR7 591 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 MORC4Q8TE76 937 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 LENG1Q96BZ8 264 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 SHISA4Q96DD7 197 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 IWS1Q96ST2 819 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 KATNBL1Q9H079 304 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 CRISPLD2Q9H0B8 497 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 C6orf50Q9HD87 102 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 RIC8AQ9NPQ8 531 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 XPNPEP3Q9NQH7 507 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 PDGFCQ9NRA1 345 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 VPS54Q9P1Q0 977 aa13.15□□□□□ -0.3
CCDC88C-212ENST00000556767 FARP2O94887 1054 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 EDNRBP24530 442 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 CCND2P30279 289 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 NLRP5P59047 1200 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 TNFAIP2Q03169 654 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 PGM5Q15124 567 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 ZFP91Q96JP5 570 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 PDCD2LQ9BRP1 358 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 GLT8D2Q9H1C3 349 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 ORC3Q9UBD5 711 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 OGDHLQ9ULD0 1010 aa13.14□□□□□ -0.31
CCDC88C-212ENST00000556767 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 CTDNEP1O95476 244 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 PGK1P00558 417 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 CAPN2P17655 700 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 GNA11P29992 359 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 GJC2Q5T442 439 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 JAKMIP3Q5VZ66 844 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 IQSEC1Q6DN90 963 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 TAPT1Q6NXT6 567 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 ARRDC4Q8NCT1 418 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 IL31RAQ8NI17 732 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 WASF1Q92558 559 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 PGBD1Q96JS3 809 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 AIFM3Q96NN9 605 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 WDR11Q9BZH6 1224 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 EHMT1Q9H9B1 1298 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 SPC25Q9HBM1 224 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 SH2B1Q9NRF2 756 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 TMEM260Q9NX78 707 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 PCDHA6Q9UN73 950 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 PCDHA8Q9Y5H6 950 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 STK36Q9NRP7 1315 aa13.13□□□□□ -0.31
CCDC88C-212ENST00000556767 ESYT2A0FGR8 921 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 JAK2O60674 1132 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 DUSP11O75319 330 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 EIF3JO75822 258 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 C6orf222P0C671 652 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 SMPD1P17405 629 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 XBP1P17861 261 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 FOSBP53539 338 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 TTLL4Q14679 1199 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 VSIG10LQ86VR7 867 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 ANKLE1Q8NAG6 615 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 IL27Q8NEV9 243 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 BICD2Q8TD16 824 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 SCFD2Q8WU76 684 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 ALG1Q9BT22 464 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 ZMYND12Q9H0C1 365 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 AP5M1Q9H0R1 490 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 SH3GLB2Q9NR46 395 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 RTEL1Q9NZ71 1219 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 LRRC37A2A6NM11 1700 aa13.12□□□□□ -0.31
CCDC88C-212ENST00000556767 FRMPD3Q5JV73 1810 aa13.11□□□□□ -0.31
CCDC88C-212ENST00000556767 KBTBD13C9JR72 458 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms