RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 A0A1W2PQY0 241 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 hCG_1642624A0A1W2PR95 340 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 B4DLN1 442 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 EIF2AK2P19525 551 aaKnown RBP15.86■□□□□ 0.13
SHMT2-219ENST00000555563 MRPL12P52815 198 aaKnown RBP15.86■□□□□ 0.13
SHMT2-219ENST00000555563 RCAN1P53805 252 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 ARHGEF16Q5VV41 709 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 SPC25Q9HBM1 224 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 PXMP2Q9NR77 195 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 NID2Q14112 1375 aa15.86■□□□□ 0.13
SHMT2-219ENST00000555563 RBM47A0AV96 593 aaKnown RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 GCOM1H8Y6P7 765 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 POLR2MP0CAP2 368 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 CDC27P30260 824 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 ACLYP53396 1101 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 RTP1P59025 263 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 NKX3-2P78367 333 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 BEX3Q00994 111 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 FUT2Q10981 343 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 SNX17Q15036 470 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 KCNA10Q16322 511 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 DUSP28Q4G0W2 176 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 FBXL16Q8N461 479 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 SAMD3Q8N6K7 520 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 TSEN34Q9BSV6 310 aaKnown RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 AGXT2Q9BYV1 514 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 WDR11Q9BZH6 1224 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 ZSWIM6Q9HCJ5 1215 aa15.85■□□□□ 0.13
SHMT2-219ENST00000555563 FAM217BQ9NTX9 383 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 MAP3K20Q9NYL2 800 aaKnown RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 ZMYND8Q9ULU4 1186 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-219ENST00000555563 MOXD2PA6NHM9 499 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 SYN1P17600 705 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 METAP2P50579 478 aaKnown RBP eCLIP15.84■□□□□ 0.132e-6■■■□□ 17.5
SHMT2-219ENST00000555563 PPP2R5BQ15173 497 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 TRIM60Q495X7 471 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 GNASQ5JWF2 1037 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 SLC39A5Q6ZMH5 540 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 RUFY3Q7L099 469 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 IL31RAQ8NI17 732 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 SCFD2Q8WU76 684 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 GPKOWQ92917 476 aaPredicted RBP eCLIP15.84■□□□□ 0.13
SHMT2-219ENST00000555563 IWS1Q96ST2 819 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 UPF3BQ9BZI7 483 aaKnown RBP15.84■□□□□ 0.13
SHMT2-219ENST00000555563 AP5M1Q9H0R1 490 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 KIAA1217Q5T5P2 1943 aa15.84■□□□□ 0.13
SHMT2-219ENST00000555563 DYNC1LI2O43237 492 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-219ENST00000555563 ASGR1P07306 291 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 NR3C2P08235 984 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 PGM5Q15124 567 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 FSCN1Q16658 493 aaKnown RBP15.83■□□□□ 0.12
SHMT2-219ENST00000555563 HEATR3Q7Z4Q2 680 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 FCHSD1Q86WN1 690 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 PCSK9Q8NBP7 692 aaKnown RBP15.83■□□□□ 0.12
SHMT2-219ENST00000555563 PDCD2LQ9BRP1 358 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 TM6SF1Q9BZW5 370 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 STARD7Q9NQZ5 370 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 RBM27Q9P2N5 1060 aaKnown RBP15.83■□□□□ 0.12
SHMT2-219ENST00000555563 ATP11BQ9Y2G3 1177 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 Q9Y3F1 56 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 CYP46A1Q9Y6A2 500 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 FRMPD4Q14CM0 1322 aa15.83■□□□□ 0.12
SHMT2-219ENST00000555563 ARIH2O95376 493 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 KCNA4P22459 653 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 TOB2Q14106 344 aaPredicted RBP15.82■□□□□ 0.12
SHMT2-219ENST00000555563 STXBP2Q15833 593 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 C1orf53Q5VUE5 145 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 WWC2Q6AWC2 1192 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 SEPT14Q6ZU15 432 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 OR6J1Q8NGC5 347 aa15.82■□□□□ 0.12
SHMT2-219ENST00000555563 PIK3CDO00329 1044 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 NKRFO15226 690 aaKnown RBP eCLIP15.81■□□□□ 0.12
SHMT2-219ENST00000555563 TXNP10599 105 aaKnown RBP15.81■□□□□ 0.12
SHMT2-219ENST00000555563 MYCLP12524 364 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-219ENST00000555563 ADD1P35611 737 aaKnown RBP15.81■□□□□ 0.12
SHMT2-219ENST00000555563 EVCP57679 992 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 TTLL4Q14679 1199 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 LTBP2Q14767 1821 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 CCDC62Q6P9F0 684 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 USP17L6PQ6QN14 398 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 CXCL17Q6UXB2 119 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 SMARCC2Q8TAQ2 1214 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 COPS5Q92905 334 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 CUL5Q93034 780 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 GLT1D1Q96MS3 346 aa15.81■□□□□ 0.12
SHMT2-219ENST00000555563 ELP1O95163 1332 aa15.8■□□□□ 0.12
SHMT2-219ENST00000555563 CCDC196A0A1B0GTZ2 297 aa15.8■□□□□ 0.12
SHMT2-219ENST00000555563 MEIS2O14770 477 aa15.8■□□□□ 0.12
SHMT2-219ENST00000555563 EIF3JO75822 258 aaKnown RBP15.8■□□□□ 0.12
SHMT2-219ENST00000555563 TYW1BQ6NUM6 668 aa15.8■□□□□ 0.12
SHMT2-219ENST00000555563 PSTPIP2Q9H939 334 aa15.8■□□□□ 0.12
SHMT2-219ENST00000555563 V9GY48 417 aaPredicted RBP15.8■□□□□ 0.12
SHMT2-219ENST00000555563 STXBP3O00186 592 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 ZEB2O60315 1214 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 PQBP1O60828 265 aaKnown RBP15.79■□□□□ 0.12
SHMT2-219ENST00000555563 RGS20O76081 388 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 SEC24BO95487 1268 aa15.79■□□□□ 0.12
SHMT2-219ENST00000555563 PDIA3P30101 505 aaKnown RBP15.79■□□□□ 0.12
SHMT2-219ENST00000555563 CCND2P30279 289 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms