RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 RAD50Q92878 1312 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 ABHD14A-ACY1A0A1B0GW23 586 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 C19orf67A6NJJ6 358 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 SLC1A4P43007 532 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 PTGISQ16647 500 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 TCTN1Q2MV58 587 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 LRRC8DQ7L1W4 858 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 CCDC155Q8N6L0 562 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 FBXO22Q8NEZ5 403 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 CHMP4CQ96CF2 233 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 MRPL38Q96DV4 380 aaKnown RBP11.47□□□□□ -0.57
SCFD1-215ENST00000555259 C17orf80Q9BSJ5 609 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 ZNF287Q9HBT7 754 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 ADD3Q9UEY8 706 aaKnown RBP11.47□□□□□ -0.57
SCFD1-215ENST00000555259 PRKAG3Q9UGI9 489 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 PLIN4Q96Q06 1357 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 MYH7P12883 1935 aa11.47□□□□□ -0.57
SCFD1-215ENST00000555259 LOC102724159A0A0B4J2E5 919 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 PLA2G6O60733 806 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 NBNO60934 754 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 CXCL10P02778 98 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 SELPP16109 830 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 MCCP23508 829 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 BAATQ14032 418 aaPredicted RBP11.46□□□□□ -0.57
SCFD1-215ENST00000555259 PPP2R5BQ15173 497 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 PWP2Q15269 919 aaKnown RBP11.46□□□□□ -0.57
SCFD1-215ENST00000555259 ZSCAN25Q6NSZ9 544 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 FAM117BQ6P1L5 589 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 CRBNQ96SW2 442 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 CTNNA3Q9UI47 895 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 CCPG1Q9ULG6 757 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 PRR12Q9ULL5 1215 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 FAM50BQ9Y247 325 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 ZDBF2Q9HCK1 2354 aa11.46□□□□□ -0.57
SCFD1-215ENST00000555259 NKRFO15226 690 aaKnown RBP eCLIP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 ST18O60284 1047 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 EFCAB14O75071 495 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 PARNO95453 639 aaKnown RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 CHMP4BP1P59074 171 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 PTPROQ16827 1216 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 TIGD5Q53EQ6 642 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 GDF6Q6KF10 455 aaPredicted RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 KCTD1Q719H9 257 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 ADHFE1Q8IWW8 467 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 NEDD1Q8NHV4 660 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 DHX38Q92620 1227 aaKnown RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 COPS5Q92905 334 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 PABPC5Q96DU9 382 aaKnown RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 EPB41L4AQ9HCS5 686 aaPredicted RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 DMDP11532 3685 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 RBAK-RBAKDNI3L0D1 243 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 ICAM1P05362 532 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 TSPY3P0CV98 308 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 TSPY8P0CW00 308 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 IRS1P35568 1242 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 RBL2Q08999 1139 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 COL19A1Q14993 1142 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 SESTD1Q86VW0 696 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 BANK1Q8NDB2 785 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 PRSS33Q8NF86 280 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 SCFD2Q8WU76 684 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 UPF3BQ9BZI7 483 aaKnown RBP11.45□□□□□ -0.58
SCFD1-215ENST00000555259 INSL6Q9Y581 213 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 TECTAO75443 2155 aa11.45□□□□□ -0.58
SCFD1-215ENST00000555259 NFIBO00712 420 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 CKBP12277 381 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 TDO2P48775 406 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 IKBKEQ14164 716 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 TCEAL5Q5H9L2 206 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 RCSD1Q6JBY9 416 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 EP400NLQ6ZTU2 488 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 RASGRP2Q7LDG7 609 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 MUTYHQ9UIF7 546 aa11.44□□□□□ -0.58
SCFD1-215ENST00000555259 PTPDC1A2A3K4 754 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 TXNP10599 105 aaKnown RBP11.43□□□□□ -0.58
SCFD1-215ENST00000555259 PTPN5P54829 565 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 TFAP4Q01664 338 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 PDE4DQ08499 809 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 EPC2Q52LR7 807 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 HERC4Q5GLZ8 1057 aaPredicted RBP11.43□□□□□ -0.58
SCFD1-215ENST00000555259 SLC30A10Q6XR72 485 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.43□□□□□ -0.584e-10■■■■□ 25.5
SCFD1-215ENST00000555259 SP7Q8TDD2 431 aaPredicted RBP11.43□□□□□ -0.58
SCFD1-215ENST00000555259 OSBP2Q969R2 916 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 RANBP17Q9H2T7 1088 aaKnown RBP11.43□□□□□ -0.58
SCFD1-215ENST00000555259 CACNA1AO00555 2505 aa11.43□□□□□ -0.58
SCFD1-215ENST00000555259 DCHS1Q96JQ0 3298 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 ZFHX2Q9C0A1 2572 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-215ENST00000555259 H3BNC9 293 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 ARIH2O95376 493 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 EDNRBP24530 442 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 CALML3P27482 149 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 HTRA4P83105 476 aaPredicted RBP11.42□□□□□ -0.58
SCFD1-215ENST00000555259 IER5LQ5T953 404 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 TRAF7Q6Q0C0 670 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 KAT2BQ92831 832 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 NSUN3Q9H649 340 aaKnown RBP11.42□□□□□ -0.58
SCFD1-215ENST00000555259 CLDND1Q9NY35 253 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 STX8Q9UNK0 236 aa11.42□□□□□ -0.58
SCFD1-215ENST00000555259 CACNA1HO95180 2353 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms