RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 IRX5P78411 483 aaPredicted RBP18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 GPR153Q6NV75 609 aa18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 NOL8Q76FK4 1167 aaKnown RBP18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 TBC1D5Q92609 795 aa18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 PIGSQ96S52 555 aa18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 RMDN3Q96TC7 470 aa18.61■□□□□ 0.57
CCDC88C-209ENST00000554872 TRIM43BA6NCK2 446 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 DCDC2CA8MYV0 355 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 ARVCFO00192 962 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 DYNC1LI2O43237 492 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 CPT1AP50416 773 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 FAAP100Q0VG06 881 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 COL9A3Q14050 684 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 PPP2R5BQ15173 497 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 CCDC62Q6P9F0 684 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 TRIM43Q96BQ3 446 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 NEK1Q96PY6 1258 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 TAAR1Q96RJ0 339 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 GPHNQ9NQX3 736 aaPredicted RBP18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 PXMP2Q9NR77 195 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 TBX21Q9UL17 535 aa18.6■□□□□ 0.57
CCDC88C-209ENST00000554872 FRMPD4Q14CM0 1322 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 CCDC69A6NI79 296 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 A6NJR5 290 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 PQBP1O60828 265 aaKnown RBP18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 HMGB1P09429 215 aaKnown RBP18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 RCAN1P53805 252 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 MDM2Q00987 491 aaPredicted RBP18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 BEX3Q00994 111 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 EXOSC10Q01780 885 aaKnown RBP18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 TTLL4Q14679 1199 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 STXBP2Q15833 593 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 TMEM63BQ5T3F8 832 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 FAM126BQ8IXS8 530 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 POLR3EQ9NVU0 708 aa18.59■□□□□ 0.57
CCDC88C-209ENST00000554872 KPNA6O60684 536 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 EIF3JO75822 258 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 CFBP00751 764 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 CXCL17Q6UXB2 119 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 NFXL1Q6ZNB6 911 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 DHX32Q7L7V1 743 aaKnown RBP18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 SH3RF1Q7Z6J0 888 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 HOMER1Q86YM7 354 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 RASEFQ8IZ41 740 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 PDCD2LQ9BRP1 358 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 PRDM5Q9NQX1 630 aaPredicted RBP18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 SLC12A7Q9Y666 1083 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 KIAA1217Q5T5P2 1943 aa18.58■□□□□ 0.56
CCDC88C-209ENST00000554872 GCOM1H8Y6P7 765 aaPredicted RBP18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 CD4P01730 458 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 NR3C2P08235 984 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 POLR2MP0CAP2 368 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 BRDTQ58F21 947 aaPredicted RBP18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 ARHGEF16Q5VV41 709 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 TEX2Q8IWB9 1127 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 EMID1Q96A84 441 aaPredicted RBP18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 RRP36Q96EU6 259 aaKnown RBP18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 MYL10Q9BUA6 226 aa18.57■□□□□ 0.56
CCDC88C-209ENST00000554872 GRIN2DO15399 1336 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 SCN10AQ9Y5Y9 1956 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 PIK3CDO00329 1044 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 REC8O95072 547 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 ARIH2O95376 493 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 TXNP10599 105 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 HSPA4P34932 840 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 PURAQ00577 322 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 ITGA7Q13683 1181 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 APOA5Q6Q788 366 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 TMTC3Q6ZXV5 915 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 VSIG10LQ86VR7 867 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 FBXL16Q8N461 479 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 SRBD1Q8N5C6 995 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 FANCBQ8NB91 859 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 OR6J1Q8NGC5 347 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 BADQ92934 168 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 TMEM39AQ9NV64 488 aa18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 LAMA2P24043 3122 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 BAZ2BQ9UIF8 2168 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-209ENST00000554872 SOX1O00570 391 aaPredicted RBP18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 TLR3O15455 904 aaKnown RBP18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 PLEKHA8P1O95397 391 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 TIMP1P01033 207 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 EIF2AK2P19525 551 aaKnown RBP18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 PTGS1P23219 599 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 ITGB8P26012 769 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 ADCK5Q3MIX3 580 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 KCNV1Q6PIU1 500 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 PPP4R2Q9NY27 417 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 PCDH10Q9P2E7 1040 aa18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 SEC63Q9UGP8 760 aaKnown RBP18.55■□□□□ 0.56
CCDC88C-209ENST00000554872 STAM2O75886 525 aa18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 GH1P01241 217 aa18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 RAG1P15918 1043 aa18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 PGM5Q15124 567 aa18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 VTI1AQ96AJ9 217 aa18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 MTG1Q9BT17 334 aaPredicted RBP18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 RBM28Q9NW13 759 aaKnown RBP18.54■□□□□ 0.56
CCDC88C-209ENST00000554872 TGFB3P10600 412 aa18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 HOXA13P31271 388 aaPredicted RBP18.53■□□□□ 0.56
CCDC88C-209ENST00000554872 ARHGAP1Q07960 439 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms