RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 BMP8AQ7Z5Y6 402 aa16.46■□□□□ 0.23
PRPF39-204ENST00000553605 ZNF444Q8N0Y2 327 aaPredicted RBP16.46■□□□□ 0.23
PRPF39-204ENST00000553605 RHPN1Q8TCX5 695 aa16.46■□□□□ 0.23
PRPF39-204ENST00000553605 STAG1Q8WVM7 1258 aa16.46■□□□□ 0.23
PRPF39-204ENST00000553605 ADD3Q9UEY8 706 aaKnown RBP16.46■□□□□ 0.23
PRPF39-204ENST00000553605 MYH4Q9Y623 1939 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 GFRA3O60609 400 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 NBNO60934 754 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 ALDH5A1P51649 535 aaPredicted RBP16.45■□□□□ 0.22
PRPF39-204ENST00000553605 SNAP25P60880 206 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 TCEAL5Q5H9L2 206 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 CLASRPQ8N2M8 674 aaKnown RBP16.45■□□□□ 0.22
PRPF39-204ENST00000553605 EDAQ92838 391 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 PUS7LQ9H0K6 701 aaKnown RBP16.45■□□□□ 0.22
PRPF39-204ENST00000553605 BOLA2Q9H3K6 86 aa16.45■□□□□ 0.22
PRPF39-204ENST00000553605 NKRFO15226 690 aaKnown RBP eCLIP16.44■□□□□ 0.22
PRPF39-204ENST00000553605 IFIT2P09913 472 aaKnown RBP16.44■□□□□ 0.22
PRPF39-204ENST00000553605 COL19A1Q14993 1142 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 PKN1Q16512 942 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 EPC2Q52LR7 807 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 HSP90AB4PQ58FF6 505 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 ZKSCAN2Q63HK3 967 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 CEP85Q6P2H3 762 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 RNF135Q8IUD6 432 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 PBXIP1Q96AQ6 731 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 CTAGE1Q96RT6 745 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 POP1Q99575 1024 aaKnown RBP16.44■□□□□ 0.22
PRPF39-204ENST00000553605 CLDND1Q9NY35 253 aa16.44■□□□□ 0.22
PRPF39-204ENST00000553605 C5orf42Q9H799 3197 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 LOC102724159A0A0B4J2E5 919 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 ZNF316A6NFI3 1004 aaPredicted RBP16.43■□□□□ 0.22
PRPF39-204ENST00000553605 PRDM1O75626 825 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 CKBP12277 381 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 SLC1A4P43007 532 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 TCF15Q12870 199 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 BAATQ14032 418 aaPredicted RBP16.43■□□□□ 0.22
PRPF39-204ENST00000553605 PPP2R5BQ15173 497 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 PWP2Q15269 919 aaKnown RBP16.43■□□□□ 0.22
PRPF39-204ENST00000553605 GDF6Q6KF10 455 aaPredicted RBP16.43■□□□□ 0.22
PRPF39-204ENST00000553605 COPS5Q92905 334 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 CHMP4CQ96CF2 233 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 GMCL1Q96IK5 515 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 SAMD11Q96NU1 681 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 ZNF287Q9HBT7 754 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 CCPG1Q9ULG6 757 aa16.43■□□□□ 0.22
PRPF39-204ENST00000553605 H3BNC9 293 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 PLA2G6O60733 806 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 MCCP23508 829 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 RBL2Q08999 1139 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 GPM6BQ13491 265 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 SMAD2Q15796 467 aaKnown RBP16.42■□□□□ 0.22
PRPF39-204ENST00000553605 GIMAP6Q6P9H5 292 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.42■□□□□ 0.22
PRPF39-204ENST00000553605 SESTD1Q86VW0 696 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 DHX38Q92620 1227 aaKnown RBP16.42■□□□□ 0.22
PRPF39-204ENST00000553605 STRBPQ96SI9 672 aaKnown RBP16.42■□□□□ 0.22
PRPF39-204ENST00000553605 BCL11AQ9H165 835 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 NSUN3Q9H649 340 aaKnown RBP16.42■□□□□ 0.22
PRPF39-204ENST00000553605 PRR12Q9ULL5 1215 aa16.42■□□□□ 0.22
PRPF39-204ENST00000553605 TMEM221A6NGB7 291 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 GSG1L2A8MUP6 293 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 M0R296 226 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 NCK2O43639 380 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 LTBRP36941 435 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 HTRA4P83105 476 aaPredicted RBP16.41■□□□□ 0.22
PRPF39-204ENST00000553605 ZSCAN25Q6NSZ9 544 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 TRIM67Q6ZTA4 783 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 KCTD1Q719H9 257 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 SUGP1Q8IWZ8 645 aaKnown RBP16.41■□□□□ 0.22
PRPF39-204ENST00000553605 SP7Q8TDD2 431 aaPredicted RBP16.41■□□□□ 0.22
PRPF39-204ENST00000553605 SCFD2Q8WU76 684 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 TECTAO75443 2155 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 LCTP09848 1927 aa16.41■□□□□ 0.22
PRPF39-204ENST00000553605 AMHP03971 560 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 TSPY3P0CV98 308 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 TSPY8P0CW00 308 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 TXNP10599 105 aaKnown RBP16.4■□□□□ 0.22
PRPF39-204ENST00000553605 ATP5JP18859 108 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 PDE4DQ08499 809 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 RCSD1Q6JBY9 416 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 RPAINQ86UA6 219 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 ITPRIPQ8IWB1 547 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 NEDD1Q8NHV4 660 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 KIF1BPQ96EK5 621 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 HAUS7Q99871 368 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 FAM86C1Q9NVL1 165 aa16.4■□□□□ 0.22
PRPF39-204ENST00000553605 PTPDC1A2A3K4 754 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 RBAK-RBAKDNI3L0D1 243 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 MBTPS2O43462 519 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 ICAM1P05362 532 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 CLUL1Q15846 466 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 MYOCDQ8IZQ8 938 aa16.39■□□□□ 0.21
PRPF39-204ENST00000553605 ZDBF2Q9HCK1 2354 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 CACNA1AO00555 2505 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 STXBP3O00186 592 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 NFIBO00712 420 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 LGR5O75473 907 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 PDE4BQ07343 736 aa16.38■□□□□ 0.21
PRPF39-204ENST00000553605 DLX2Q07687 328 aaPredicted RBP16.38■□□□□ 0.21
PRPF39-204ENST00000553605 CTC1Q2NKJ3 1217 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms