RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 BTAF1O14981 1849 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 KIF1BO60333 1816 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 ENC1O14682 589 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 PDPK1O15530 556 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 GREM1O60565 184 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 DDAH1O94760 285 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 F13A1P00488 732 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 DPEP1P16444 411 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 TFE3P19532 575 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 CRKP46108 304 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 PRKCQQ04759 706 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 RASA3Q14644 834 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 ARSHQ5FYA8 562 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 PPM1JQ5JR12 505 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 LLGL2Q6P1M3 1020 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 BNC2Q6ZN30 1099 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 ATG4DQ86TL0 474 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 CCDC84Q86UT8 332 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 SLITRK4Q8IW52 837 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 PRPF38AQ8NAV1 312 aaKnown RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 GPBAR1Q8TDU6 330 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 GATAD2BQ8WXI9 593 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 GPATCH3Q96I76 525 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 SHDQ96IW2 340 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 HEXIM2Q96MH2 286 aaKnown RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 DNAJC7Q99615 494 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 EMILIN2Q9BXX0 1053 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 BRINP2Q9C0B6 783 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 KCNQ5Q9NR82 932 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 CCNL1Q9UK58 526 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-208ENST00000551691 VAV3Q9UKW4 847 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 PCOLCE2Q9UKZ9 415 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 ANKARQ7Z5J8 1434 aa5.05□□□□□ -1.6
LIMA1-208ENST00000551691 ANKRD30BQ9BXX2 1392 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 AKAP12Q02952 1782 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 SZT2Q5T011 3432 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 DCDC2CA8MYV0 355 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 FARP2O94887 1054 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-208ENST00000551691 VEGFAP15692 232 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-208ENST00000551691 KCNA3P22001 575 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 SOX10P56693 466 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 SEPT6Q14141 434 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 KSR1Q8IVT5 923 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 GRIN3AQ8TCU5 1115 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 CCDC136Q96JN2 1154 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 MCOLN1Q9GZU1 580 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 CCDC113Q9H0I3 377 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 KRT82Q9NSB4 513 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIMA1-208ENST00000551691 CYP8B1Q9UNU6 501 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 PPLO60437 1756 aa5.04□□□□□ -1.6
LIMA1-208ENST00000551691 SYNGAP1Q96PV0 1343 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 FAM221BA6H8Z2 402 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 PAGE1O75459 146 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 NME2P22392 152 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 CNGA1P29973 690 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 IKZF1Q13422 519 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 PLEKHG4Q58EX7 1191 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 ZC3H12AQ5D1E8 599 aaKnown RBP5.03□□□□□ -1.6
LIMA1-208ENST00000551691 ANGEL2Q5VTE6 544 aaKnown RBP5.03□□□□□ -1.6
LIMA1-208ENST00000551691 REC114Q7Z4M0 266 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 C12orf40Q86WS4 652 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 FBXO27Q8NI29 283 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 CEP89Q96ST8 783 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 CDK19Q9BWU1 502 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 LRRC3Q9BY71 257 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 BRMS1Q9HCU9 246 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 PCDH12Q9NPG4 1184 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 CNTNAP1P78357 1384 aa5.03□□□□□ -1.6
LIMA1-208ENST00000551691 NHSQ6T4R5 1651 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 N4BP2Q86UW6 1770 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-208ENST00000551691 TMEM265A0A087WTH1 108 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 ESYT3A0FGR9 886 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 LRRC10BA6NIK2 292 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 DBX1A6NMT0 343 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 S100BP04271 92 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-208ENST00000551691 GARTP22102 1010 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 ARNTP27540 789 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 GIPRP48546 466 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 ZP2Q05996 745 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 RASGRF1Q13972 1273 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 PKN1Q16512 942 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 MLANAQ16655 118 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 HSP90AB2PQ58FF8 381 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 FYB2Q5VWT5 728 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 SPOCD1Q6ZMY3 1216 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 REXO1Q8N1G1 1221 aaKnown RBP5.02□□□□□ -1.61
LIMA1-208ENST00000551691 CELF2-AS1Q8N7Q2 184 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 RNF214Q8ND24 703 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 LIN37Q96GY3 246 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-208ENST00000551691 FEZ1Q99689 392 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 PICK1Q9NRD5 415 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 PFDN2Q9UHV9 154 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 PCDHB5Q9Y5E4 795 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 QSER1Q2KHR3 1735 aa5.02□□□□□ -1.61
LIMA1-208ENST00000551691 RGPD5Q99666 1765 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 GLTPD2A6NH11 291 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 MMP10P09238 476 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 NTF4P34130 210 aa5.01□□□□□ -1.61
LIMA1-208ENST00000551691 SSRP1Q08945 709 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms