RNA–Protein interactions for RNA: ENST00000550471.1

GCN1-207, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 918 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-207ENST00000550471 MTMR10Q9NXD2 777 aa23.16■■□□□ 1.3
GCN1-207ENST00000550471 PCDHA1Q9Y5I3 950 aa23.16■■□□□ 1.3
GCN1-207ENST00000550471 A6NJR5 290 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 EIF3JO75822 258 aaKnown RBP23.15■■□□□ 1.3
GCN1-207ENST00000550471 ITGB8P26012 769 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 GNAQP50148 359 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 HSD17B4P51659 736 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 IRX5P78411 483 aaPredicted RBP23.15■■□□□ 1.3
GCN1-207ENST00000550471 PTPN11Q06124 597 aaPredicted RBP23.15■■□□□ 1.3
GCN1-207ENST00000550471 TROAPQ12815 778 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 ARHGEF16Q5VV41 709 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 PSRC1Q6PGN9 363 aaPredicted RBP23.15■■□□□ 1.3
GCN1-207ENST00000550471 STAG2Q8N3U4 1231 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 TMEM87BQ96K49 555 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 STXBP5LQ9Y2K9 1186 aa23.15■■□□□ 1.3
GCN1-207ENST00000550471 PNMA6FA0A0J9YX94 578 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 DDAH1O94760 285 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 MCM5P33992 734 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 PURAQ00577 322 aaKnown RBP23.14■■□□□ 1.29
GCN1-207ENST00000550471 C9orf50Q5SZB4 431 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 RNF20Q5VTR2 975 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 MB21D2Q8IYB1 491 aaPredicted RBP23.14■■□□□ 1.29
GCN1-207ENST00000550471 CTCFLQ8NI51 663 aaPredicted RBP23.14■■□□□ 1.29
GCN1-207ENST00000550471 ESYT1Q9BSJ8 1104 aa23.14■■□□□ 1.29
GCN1-207ENST00000550471 HSFX4A0A1B0GTS1 333 aaPredicted RBP23.13■■□□□ 1.29
GCN1-207ENST00000550471 HSFX3A0A1B0GWH4 333 aaPredicted RBP23.13■■□□□ 1.29
GCN1-207ENST00000550471 CFBP00751 764 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 GH1P01241 217 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 CALM1P0DP23 149 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 CALM2P0DP24 149 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 CALM3P0DP25 149 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 NFRKBQ6P4R8 1299 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 IGDCC4Q8TDY8 1250 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 TAAR1Q96RJ0 339 aa23.13■■□□□ 1.29
GCN1-207ENST00000550471 DNAH12Q6ZR08 3092 aa23.12■■□□□ 1.29
GCN1-207ENST00000550471 RPUSD2Q8IZ73 545 aaKnown RBP23.12■■□□□ 1.29
GCN1-207ENST00000550471 HIPK3Q9H422 1215 aa23.12■■□□□ 1.29
GCN1-207ENST00000550471 PXMP2Q9NR77 195 aa23.12■■□□□ 1.29
GCN1-207ENST00000550471 DDX49Q9Y6V7 483 aaKnown RBP23.12■■□□□ 1.29
GCN1-207ENST00000550471 GCOM1H8Y6P7 765 aaPredicted RBP23.11■■□□□ 1.29
GCN1-207ENST00000550471 NR3C2P08235 984 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 MYL3P08590 195 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 POLR2MP0CAP2 368 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 CCDC62Q6P9F0 684 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 STOX1Q6ZVD7 989 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 EMID1Q96A84 441 aaPredicted RBP23.11■■□□□ 1.29
GCN1-207ENST00000550471 SPZ1Q9BXG8 430 aa23.11■■□□□ 1.29
GCN1-207ENST00000550471 LSG1Q9H089 658 aaKnown RBP23.11■■□□□ 1.29
GCN1-207ENST00000550471 ALDH8A1Q9H2A2 487 aaPredicted RBP23.11■■□□□ 1.29
GCN1-207ENST00000550471 MYH6P13533 1939 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 PFKMP08237 780 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 TGFB3P10600 412 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 LIFRP42702 1097 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 TBC1D5Q92609 795 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 IL23AQ9NPF7 189 aa23.1■■□□□ 1.29
GCN1-207ENST00000550471 GRIN2DO15399 1336 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 CCDC69A6NI79 296 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 STAM2O75886 525 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 CASTP20810 708 aaKnown RBP23.09■■□□□ 1.29
GCN1-207ENST00000550471 LAMC2Q13753 1193 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 HOMER1Q86YM7 354 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 RRP36Q96EU6 259 aaKnown RBP23.09■■□□□ 1.29
GCN1-207ENST00000550471 PIGSQ96S52 555 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 ANO2Q9NQ90 1003 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 COL20A1Q9P218 1284 aa23.09■■□□□ 1.29
GCN1-207ENST00000550471 SEC63Q9UGP8 760 aaKnown RBP23.09■■□□□ 1.29
GCN1-207ENST00000550471 LAMA3Q16787 3333 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 PRC1O43663 620 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 B4GALT4O60513 344 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 EIF2AK2P19525 551 aaKnown RBP23.08■■□□□ 1.29
GCN1-207ENST00000550471 ANTXR2P58335 489 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 NECTIN1Q15223 517 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 NFXL1Q6ZNB6 911 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 SEPT14Q6ZU15 432 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 Q7L0L9 218 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 ZNF654Q8IZM8 581 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 PDCD2LQ9BRP1 358 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 NOC4LQ9BVI4 516 aaKnown RBP23.08■■□□□ 1.29
GCN1-207ENST00000550471 KATNAL1Q9BW62 490 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 PPP1R12CQ9BZL4 782 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 LY9Q9HBG7 655 aa23.08■■□□□ 1.29
GCN1-207ENST00000550471 SLC27A2O14975 620 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 CSF2RAP15509 400 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 EPHB4P54760 987 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 PSMC6P62333 389 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 DGKDQ16760 1214 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 TMEM240Q5SV17 173 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 TMEM63BQ5T3F8 832 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 CREB3L3Q68CJ9 461 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 TEX2Q8IWB9 1127 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.07■■□□□ 1.284e-9■■□□□ 13.6
GCN1-207ENST00000550471 DDX41Q9UJV9 622 aaKnown RBP23.07■■□□□ 1.28
GCN1-207ENST00000550471 MRVI1Q9Y6F6 885 aa23.07■■□□□ 1.28
GCN1-207ENST00000550471 SZT2Q5T011 3432 aa23.06■■□□□ 1.28
GCN1-207ENST00000550471 OPLAHO14841 1288 aa23.06■■□□□ 1.28
GCN1-207ENST00000550471 PPP1R11O60927 126 aaPredicted RBP23.06■■□□□ 1.28
GCN1-207ENST00000550471 CCND2P30279 289 aa23.06■■□□□ 1.28
GCN1-207ENST00000550471 RFC2P35250 354 aa23.06■■□□□ 1.28
GCN1-207ENST00000550471 RASIP1Q5U651 963 aa23.06■■□□□ 1.28
GCN1-207ENST00000550471 SYNE3Q6ZMZ3 975 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms