RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 NBPF20Q3BBV1 942 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 TAPT1Q6NXT6 567 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 TMEM179Q6ZVK1 233 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 CERS3Q8IU89 383 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 TMEM105Q8N8V8 129 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 SP7Q8TDD2 431 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-217ENST00000548420 CTAGE1Q96RT6 745 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 ECHDC1Q9NTX5 307 aa16.72■□□□□ 0.27
PTCH1-217ENST00000548420 TCRBV5S4A2TA0A5A2 114 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 NBNO60934 754 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 AKR1B1P15121 316 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 PURAQ00577 322 aaKnown RBP16.71■□□□□ 0.27
PTCH1-217ENST00000548420 MKRN4PQ13434 485 aaPredicted RBP16.71■□□□□ 0.27
PTCH1-217ENST00000548420 FAM83BQ5T0W9 1011 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.71■□□□□ 0.27
PTCH1-217ENST00000548420 EXOC6Q8TAG9 804 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 DNAJC2Q99543 621 aaKnown RBP16.71■□□□□ 0.27
PTCH1-217ENST00000548420 PAG1Q9NWQ8 432 aa16.71■□□□□ 0.27
PTCH1-217ENST00000548420 FASNP49327 2511 aaKnown RBP16.7■□□□□ 0.26
PTCH1-217ENST00000548420 CXCL10P02778 98 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 PDE6AP16499 860 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 HTRA4P83105 476 aaPredicted RBP16.7■□□□□ 0.26
PTCH1-217ENST00000548420 ICA1Q05084 483 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 FAM47CQ5HY64 1035 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 SLC9C2Q5TAH2 1124 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 CNKSR3Q6P9H4 555 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 FAM133AQ8N9E0 248 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 RIOK1Q9BRS2 568 aaKnown RBP16.7■□□□□ 0.26
PTCH1-217ENST00000548420 BCL11AQ9H165 835 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 ARHGEF10LQ9HCE6 1279 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 CD207Q9UJ71 328 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 Q9Y3F1 56 aa16.7■□□□□ 0.26
PTCH1-217ENST00000548420 NLRC5Q86WI3 1866 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 MICAL3Q7RTP6 2002 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 BFSP2Q13515 415 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 ST3GAL2Q16842 350 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 CPXCR1Q8N123 301 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 ANKRD35Q8N283 1001 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 MSLNLQ96KJ4 702 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 RIPOR3Q96MK2 946 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 INSL6Q9Y581 213 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 FRYLO94915 3013 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 SALL3Q9BXA9 1300 aa16.69■□□□□ 0.26
PTCH1-217ENST00000548420 ABHD14A-ACY1A0A1B0GW23 586 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 NCK2O43639 380 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 EYA4O95677 639 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 CYP2D6P10635 497 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 ADD2P35612 726 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 PUM1Q14671 1186 aaKnown RBP eCLIP16.68■□□□□ 0.26
PTCH1-217ENST00000548420 IQSEC1Q6DN90 963 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 EEPD1Q7L9B9 569 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 DHX38Q92620 1227 aaKnown RBP16.68■□□□□ 0.26
PTCH1-217ENST00000548420 NUP88Q99567 741 aaPredicted RBP16.68■□□□□ 0.26
PTCH1-217ENST00000548420 RAVER2Q9HCJ3 691 aaKnown RBP16.68■□□□□ 0.26
PTCH1-217ENST00000548420 TTC41PQ6P2S7 1318 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 ZNF532Q9HCE3 1301 aa16.68■□□□□ 0.26
PTCH1-217ENST00000548420 ATP2A1O14983 1001 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 POLR3DP05423 398 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-217ENST00000548420 MYL3P08590 195 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 ARP10275 920 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
PTCH1-217ENST00000548420 LRRFIP1Q32MZ4 808 aaKnown RBP16.67■□□□□ 0.26
PTCH1-217ENST00000548420 FBXO16Q8IX29 292 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-217ENST00000548420 SMC5Q8IY18 1101 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 TMEM192Q8IY95 271 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 KIAA2013Q8IYS2 634 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 DYNLL2Q96FJ2 89 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 GPATCH3Q96I76 525 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 RWDD1Q9H446 243 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-217ENST00000548420 DLL3Q9NYJ7 618 aa16.67■□□□□ 0.26
PTCH1-217ENST00000548420 MAGEB6P1A0A0J9YX57 407 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 IGHDP01880 384 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 HOXB3P14651 431 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-217ENST00000548420 ADAM15Q13444 863 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 UBE3CQ15386 1083 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 ANKRD45Q5TZF3 282 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 NFRKBQ6P4R8 1299 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 PI4K2BQ8TCG2 481 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 OTUD7AQ8TE49 926 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-217ENST00000548420 SLF1Q9BQI6 1058 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 MTG1Q9BT17 334 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-217ENST00000548420 IGFLR1Q9H665 355 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 POLR3EQ9NVU0 708 aa16.66■□□□□ 0.26
PTCH1-217ENST00000548420 MYH8P13535 1937 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 TSHZ3Q63HK5 1081 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 LRRC8DQ7L1W4 858 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 FBXO11Q86XK2 927 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 KBTBD3Q8NAB2 608 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 AFAP1L1Q8TED9 768 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 SAMD11Q96NU1 681 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.65■□□□□ 0.26
PTCH1-217ENST00000548420 SH2D4AQ9H788 454 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 CLEC1BQ9P126 229 aa16.65■□□□□ 0.26
PTCH1-217ENST00000548420 ANKRD11Q6UB99 2663 aaPredicted RBP16.64■□□□□ 0.26
PTCH1-217ENST00000548420 GRM6O15303 877 aa16.64■□□□□ 0.25
PTCH1-217ENST00000548420 LGR5O75473 907 aa16.64■□□□□ 0.25
PTCH1-217ENST00000548420 SELPP16109 830 aa16.64■□□□□ 0.25
PTCH1-217ENST00000548420 ICAM3P32942 547 aa16.64■□□□□ 0.25
PTCH1-217ENST00000548420 MBTPS1Q14703 1052 aa16.64■□□□□ 0.25
PTCH1-217ENST00000548420 PTPN21Q16825 1174 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms