RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-217	ENST00000546164	MOXD2P	A6NHM9	499 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	CTAGE5	O15320	804 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	EIF5B	O60841	1220 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	CFB	P00751	764 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	SMPD1	P17405	629 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	FUT2	Q10981	343 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	RTN1	Q16799	776 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	DUSP28	Q4G0W2	176 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	EEPD1	Q7L9B9	569 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	RAB11FIP4	Q86YS3	637 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	RMDN3	Q96TC7	470 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	TM6SF1	Q9BZW5	370 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	ZSWIM6	Q9HCJ5	1215 aa		13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	SEC63	Q9UGP8	760 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-217	ENST00000546164	NID2	Q14112	1375 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	ALPK3	Q96L96	1907 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	MYADML2	A6NDP7	307 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	C6orf222	P0C671	652 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	POLR2M	P0CAP2	368 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	CPA1	P15085	419 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	CAST	P20810	708 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	EVC	P57679	992 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	FGD1	P98174	961 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	SLC39A5	Q6ZMH5	540 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164		Q6ZUG5	572 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	CMTR1	Q8N1G2	835 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	PCSK9	Q8NBP7	692 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	SCFD2	Q8WU76	684 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	PXMP2	Q9NR77	195 aa		13.72	□□□□□ -0.21
YBX3-217	ENST00000546164	CNTNAP5	Q8WYK1	1306 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164		A0A1W2PQ45	241 aa	Predicted RBP	13.71	□□□□□ -0.21
YBX3-217	ENST00000546164		A0A1W2PQY0	241 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	GOLGA8A	A7E2F4	631 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	GOLGA8B	A8MQT2	603 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	PIK3CD	O00329	1044 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	NKRF	O15226	690 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	ACLY	P53396	1101 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	ATN1	P54259	1190 aa	Predicted RBP	13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	KCNA10	Q16322	511 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	ARHGEF16	Q5VV41	709 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	RUFY3	Q7L099	469 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	TLK2	Q86UE8	772 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	TEX2	Q8IWB9	1127 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	C7orf61	Q8IZ16	206 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	PIBF1	Q8WXW3	757 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	BRF1	Q92994	677 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	PDCD2L	Q9BRP1	358 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	WDR11	Q9BZH6	1224 aa		13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.71	□□□□□ -0.21
YBX3-217	ENST00000546164	ELP1	O95163	1332 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	FRMPD4	Q14CM0	1322 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	CCDC196	A0A1B0GTZ2	297 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	EIF3J	O75822	258 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	NR3C2	P08235	984 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	HOXA13	P31271	388 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	RTP1	P59025	263 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	ANAPC15	P60006	121 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	IRX5	P78411	483 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	APOBR	Q0VD83	1088 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	STXBP2	Q15833	593 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	FSCN1	Q16658	493 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	GNAS	Q5JWF2	1037 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	TMEM63B	Q5T3F8	832 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	CCDC62	Q6P9F0	684 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	NOL8	Q76FK4	1167 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	FERMT2	Q96AC1	680 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	IL17RA	Q96F46	866 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	AP5M1	Q9H0R1	490 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	PRO3102	Q9H379	93 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	CYP46A1	Q9Y6A2	500 aa		13.7	□□□□□ -0.22
YBX3-217	ENST00000546164	hCG_1984214	I3L0E3	225 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	DYNC1LI2	O43237	492 aa	Predicted RBP	13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	ASGR1	P07306	291 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	EIF2AK2	P19525	551 aa	Known RBP	13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	CDC27	P30260	824 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	METAP2	P50579	478 aa	Known RBP eCLIP	13.69	□□□□□ -0.22	3e-11	■■■□□ 14.6
YBX3-217	ENST00000546164	TTLL4	Q14679	1199 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	VSIG10L	Q86VR7	867 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	CCDC82	Q8N4S0	544 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	ZNF713	Q8N859	430 aa	Predicted RBP	13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	GLT1D1	Q96MS3	346 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	STARD7	Q9NQZ5	370 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	TRIOBP	Q9H2D6	2365 aa		13.69	□□□□□ -0.22
YBX3-217	ENST00000546164	MEIS2	O14770	477 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	ZEB2	O60315	1214 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	CABYR	O75952	493 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	PTGS1	P23219	599 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	ADD1	P35611	737 aa	Known RBP	13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	BEX3	Q00994	111 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	PGM5	Q15124	567 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	TRIM60	Q495X7	471 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	PPP1R18	Q6NYC8	613 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	CUL5	Q93034	780 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	PSTPIP2	Q9H939	334 aa		13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.68	□□□□□ -0.22
YBX3-217	ENST00000546164	hCG_1642624	A0A1W2PR95	340 aa		13.67	□□□□□ -0.22
YBX3-217	ENST00000546164		A6NJR5	290 aa		13.67	□□□□□ -0.22
YBX3-217	ENST00000546164	STAM2	O75886	525 aa		13.67	□□□□□ -0.22
YBX3-217	ENST00000546164	RGS20	O76081	388 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms