RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 SPATA31A5Q5VU36 1347 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 SPATA31A7Q8IWB4 1347 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 RNF40O75150 1001 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 SCNN1DP51172 638 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 USP14P54578 494 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 RASSF7Q02833 373 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 SLC10A5Q5PT55 438 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 SPTY2D1Q68D10 685 aaPredicted RBP16.75■□□□□ 0.27
USP28-214ENST00000545540 KCTD1Q719H9 257 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 IFIH1Q9BYX4 1025 aaKnown RBP16.75■□□□□ 0.27
USP28-214ENST00000545540 C6orf50Q9HD87 102 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 BLOC1S4Q9NUP1 217 aa16.75■□□□□ 0.27
USP28-214ENST00000545540 LRRC53A6NM62 1247 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 CYLC1P35663 651 aaPredicted RBP16.74■□□□□ 0.27
USP28-214ENST00000545540 CALCRLQ16602 461 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 TDRD12Q587J7 1177 aaKnown RBP16.74■□□□□ 0.27
USP28-214ENST00000545540 SNX29Q8TEQ0 813 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 LRRC1Q9BTT6 524 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 RTFDC1Q9BY42 306 aaPredicted RBP16.74■□□□□ 0.27
USP28-214ENST00000545540 TTYH3Q9C0H2 523 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 ZMYND12Q9H0C1 365 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 MPHOSPH10O00566 681 aaKnown RBP16.74■□□□□ 0.27
USP28-214ENST00000545540 GGCXP38435 758 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 SPA17Q15506 151 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 SLC30A10Q6XR72 485 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 CALML4Q96GE6 196 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 NYXQ9GZU5 481 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 GNAQP50148 359 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 KCNB1Q14721 858 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 SV2BQ7L1I2 683 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 GOLPH3Q9H4A6 298 aa16.74■□□□□ 0.27
USP28-214ENST00000545540 ESYT3A0FGR9 886 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 PSMD14O00487 310 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 CACNB3P54284 484 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 KRT83P78385 493 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 DPP8Q6V1X1 898 aaPredicted RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 FAM196AQ6ZSG2 479 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 WDR66Q8TBY9 1149 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 SECISBP2LQ93073 1101 aaKnown RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 PNMA5Q96PV4 448 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 NDST4Q9H3R1 872 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 BCAS3Q9H6U6 928 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 ZSCAN5CA6NGD5 496 aaPredicted RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 EIF3JO75822 258 aaKnown RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 AKR1B1P15121 316 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 GTF2IP78347 998 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 ZBED6P86452 979 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 HNRNPLLQ8WVV9 542 aaKnown RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 DDX12PQ92771 950 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 PYM1Q9BRP8 204 aaKnown RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 CD209Q9NNX6 404 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 TMEM51Q9NW97 253 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 A0A1B0GUL6 1792 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 EDIL3O43854 480 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 DHTKD1Q96HY7 919 aaPredicted RBP16.73■□□□□ 0.27
USP28-214ENST00000545540 SH3GLB2Q9NR46 395 aa16.73■□□□□ 0.27
USP28-214ENST00000545540 A0A1W2PQC6 194 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 KIF11P52732 1056 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 CNBD1Q8NA66 436 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 PCDHA13Q9Y5I0 950 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 PHLPP1O60346 1717 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 PCNTO95613 3336 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 RPS6KA4O75676 772 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 SYF2O95926 243 aaKnown RBP16.72■□□□□ 0.27
USP28-214ENST00000545540 TAF3Q5VWG9 929 aa16.72■□□□□ 0.27
USP28-214ENST00000545540 CCDC47Q96A33 483 aaKnown RBP16.72■□□□□ 0.27
USP28-214ENST00000545540 USP17L15C9J2P7 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L13C9JLJ4 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L11C9JVI0 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L18D6R9N7 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L22D6RA61 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L17D6RBQ6 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L19D6RCP7 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L20D6RJB6 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 E9PMD0 336 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 STAT3P40763 770 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L24Q0WX57 530 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 USP17L6PQ6QN14 398 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 LEKR1Q6ZMV7 388 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 SND1Q7KZF4 910 aaKnown RBP eCLIP16.71■□□□□ 0.27
USP28-214ENST00000545540 CACNA2D4Q7Z3S7 1137 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 LARP4BQ92615 738 aaKnown RBP16.71■□□□□ 0.27
USP28-214ENST00000545540 EXOC4Q96A65 974 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 TRAF5O00463 557 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 ACTN2P35609 894 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 SLC1A4P43007 532 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 VWA3BQ502W6 1294 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 KRT25Q7Z3Z0 450 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 POTEB2H3BUK9 544 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 GNA11P29992 359 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 SAMD1Q6SPF0 538 aaPredicted RBP16.71■□□□□ 0.27
USP28-214ENST00000545540 RPGRQ92834 1020 aaKnown RBP16.71■□□□□ 0.27
USP28-214ENST00000545540 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.71■□□□□ 0.27
USP28-214ENST00000545540 SELENOOQ9BVL4 669 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 CDCA7Q9BWT1 371 aaPredicted RBP16.71■□□□□ 0.27
USP28-214ENST00000545540 MYO1AQ9UBC5 1043 aa16.71■□□□□ 0.27
USP28-214ENST00000545540 STRCQ7RTU9 1775 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 FTCDO95954 541 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 MEA1Q16626 185 aa16.7■□□□□ 0.26
USP28-214ENST00000545540 ZNF804AQ7Z570 1209 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms