RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	VWA5A	O00534	786 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	ATP2A1	O14983	1001 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	DTNB	O60941	627 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	COL9A1	P20849	921 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	KRT85	P78386	507 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	ZNF697	Q5TEC3	545 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	KRT25	Q7Z3Z0	450 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	FERMT3	Q86UX7	667 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	MCF2L2	Q86YR7	1114 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	REXO1	Q8N1G1	1221 aa	Known RBP	10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	FAM161B	Q96MY7	647 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	PSTPIP2	Q9H939	334 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	MAP3K20	Q9NYL2	800 aa	Known RBP	10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	CCPG1	Q9ULG6	757 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	ADAMTS5	Q9UNA0	930 aa		10.88	□□□□□ -0.67
YBX3-215	ENST00000544504	BMP15	O95972	392 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	FOS	P01100	380 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	TRAPPC10	P48553	1259 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	AP3B2	Q13367	1082 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	FAM110C	Q1W6H9	321 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	RILPL1	Q5EBL4	403 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	FOXD4L5	Q5VV16	416 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	CCDC174	Q6PII3	467 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	ANKRD13C	Q8N6S4	541 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	MAFA	Q8NHW3	353 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	ATG4C	Q96DT6	458 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	TEX13B	Q9BXU2	312 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	SCAND2P	Q9GZW5	306 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	EHMT1	Q9H9B1	1298 aa		10.87	□□□□□ -0.67
YBX3-215	ENST00000544504	PFAS	O15067	1338 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	BTBD18	B2RXH4	712 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	PIK3CD	O00329	1044 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	PPP1R11	O60927	126 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	BAG4	O95429	457 aa	Known RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	GCLC	P48506	637 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	HERVK_113	P62684	666 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	MDM2	Q00987	491 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	ORC2	Q13416	577 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	USH1G	Q495M9	461 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	TREML2	Q5T2D2	321 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	MYSM1	Q5VVJ2	828 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	CPXCR1	Q8N123	301 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	CDX2	Q99626	313 aa	Predicted RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	NAP1L4	Q99733	375 aa	Known RBP	10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	GJB4	Q9NTQ9	266 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	FBXO40	Q9UH90	709 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	CEP131	Q9UPN4	1083 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	RABGAP1	Q9Y3P9	1069 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	MGAM	O43451	1857 aa		10.86	□□□□□ -0.67
YBX3-215	ENST00000544504	DDX11L8	A8MPP1	907 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	SLC25A27	O95847	323 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	POLR2M	P0CAP2	368 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	COL6A1	P12109	1028 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	NCL	P19338	710 aa	Known RBP	10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	STAT3	P40763	770 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	CCNA1	P78396	465 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	NONO	Q15233	471 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	NPY5R	Q15761	445 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	TYW1B	Q6NUM6	668 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	CHST13	Q8NET6	341 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	P2RX7	Q99572	595 aa	Known RBP	10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	LBHD1	Q9BQE6	289 aa	Predicted RBP	10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	PARP14	Q460N5	1801 aa		10.85	□□□□□ -0.67
YBX3-215	ENST00000544504	TTC28	Q96AY4	2481 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	SPDYE3	A6NKU9	549 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	YEATS4	O95619	227 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	ALAS1	P13196	640 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	SNAP25	P60880	206 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	GHRHR	Q02643	423 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	TRIM32	Q13049	653 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	NR5A1	Q13285	461 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	MAP3K21	Q5TCX8	1036 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	SNRNP48	Q6IEG0	339 aa	Known RBP	10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	RIOX2	Q8IUF8	465 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	REPS2	Q8NFH8	660 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	TNFRSF25	Q93038	417 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	RAVER2	Q9HCJ3	691 aa	Known RBP	10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	POLR3E	Q9NVU0	708 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	GJD2	Q9UKL4	321 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	ZNF214	Q9UL59	606 aa	Predicted RBP	10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	PCDHA6	Q9UN73	950 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	PCDHA8	Q9Y5H6	950 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	RLF	Q13129	1914 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	ZNF536	O15090	1300 aa		10.84	□□□□□ -0.67
YBX3-215	ENST00000544504	KIF28P	B7ZC32	967 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504		M0R2N6	131 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	PRKAR2A	P13861	404 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	GCFC2	P16383	781 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	CLK2	P49760	499 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	DNM1	Q05193	864 aa	Known RBP	10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	PLS1	Q14651	629 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	TMEM132B	Q14DG7	1078 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	LRRC26	Q2I0M4	334 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	PIK3AP1	Q6ZUJ8	805 aa		10.83	□□□□□ -0.68
YBX3-215	ENST00000544504	SHCBP1	Q8NEM2	672 aa		10.83	□□□□□ -0.68

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