RNA–Protein interactions for RNA: ENST00000542848.5

PTPN6-219, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 5

Gene PTPN6, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-219	ENST00000542848	SLC28A3	Q9HAS3	691 aa		13.9	□□□□□ -0.18
PTPN6-219	ENST00000542848	TRMT13	Q9NUP7	481 aa	Known RBP	13.9	□□□□□ -0.18
PTPN6-219	ENST00000542848	SLC4A7	Q9Y6M7	1214 aa		13.9	□□□□□ -0.18
PTPN6-219	ENST00000542848	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.9	□□□□□ -0.18
PTPN6-219	ENST00000542848	TNKS	O95271	1327 aa		13.9	□□□□□ -0.19
PTPN6-219	ENST00000542848	GOLGA8H	P0CJ92	632 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	PTPN11	Q06124	597 aa	Predicted RBP	13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	NBPF20	Q3BBV1	942 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	B4GALNT3	Q6L9W6	998 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	NFRKB	Q6P4R8	1299 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	CHD1L	Q86WJ1	897 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	PLEKHM2	Q8IWE5	1019 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	VWCE	Q96DN2	955 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	SCLY	Q96I15	445 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	ZKSCAN3	Q9BRR0	538 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	PTPRS	Q13332	1948 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	TCF20	Q9UGU0	1960 aa	Known RBP	13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	NEDD4	P46934	1319 aa		13.89	□□□□□ -0.19
PTPN6-219	ENST00000542848	MUC3A	Q02505	3323 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	HIP1	O00291	1037 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	TXN	P10599	105 aa	Known RBP	13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	TTLL4	Q14679	1199 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	USH1G	Q495M9	461 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	TJAP1	Q5JTD0	557 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	CWC27	Q6UX04	472 aa	Known RBP	13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	PNMA1	Q8ND90	353 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	UBA5	Q9GZZ9	404 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	NKX2-4	Q9H2Z4	354 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	KAT14	Q9H8E8	782 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	YBX2	Q9Y2T7	364 aa	Known RBP	13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	PCDHA11	Q9Y5I1	949 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	ABCB11	O95342	1321 aa		13.88	□□□□□ -0.19
PTPN6-219	ENST00000542848	KAT6A	Q92794	2004 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	KDM4A	O75164	1064 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	NEFL	P07196	543 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	CYP2C9	P11712	490 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	RFC2	P35250	354 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	NUCB1	Q02818	461 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	CDC37	Q16543	378 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	MCF2L2	Q86YR7	1114 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	COPS5	Q92905	334 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	DSCC1	Q9BVC3	393 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	DIAPH3	Q9NSV4	1193 aa		13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.87	□□□□□ -0.19
PTPN6-219	ENST00000542848	ZBBX	A8MT70	800 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	PITPNM1	O00562	1244 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	IGHD	P01880	384 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ACTN1	P12814	892 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ADGRE1	Q14246	886 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ASPRV1	Q53RT3	343 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	FAM47C	Q5HY64	1035 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	CCDC62	Q6P9F0	684 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ADGRF4	Q8IZF3	695 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	RETREG2	Q8NC44	543 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	NSUN6	Q8TEA1	469 aa	Known RBP	13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	PPM1E	Q8WY54	764 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	TBC1D5	Q92609	795 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	IWS1	Q96ST2	819 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	KRT23	Q9C075	422 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	CPVL	Q9H3G5	476 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	ZSWIM5	Q9P217	1185 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848	CTNNA3	Q9UI47	895 aa		13.86	□□□□□ -0.19
PTPN6-219	ENST00000542848		B4E1Z4	1266 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	ARIH2	O95376	493 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	ATP2A2	P16615	1042 aa	Known RBP	13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	IGFBP4	P22692	258 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	RABGGTB	P53611	331 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	BFSP2	Q13515	415 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	STXBP2	Q15833	593 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	IMMT	Q16891	758 aa	Known RBP	13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	DEFB128	Q7Z7B8	93 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	ENAH	Q8N8S7	591 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	SYTL5	Q8TDW5	730 aa	Predicted RBP	13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	TAAR1	Q96RJ0	339 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	CNNM2	Q9H8M5	875 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	PRDM6	Q9NQX0	595 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	MRPL11	Q9Y3B7	192 aa	Known RBP	13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	BDP1	A6H8Y1	2624 aa		13.85	□□□□□ -0.19
PTPN6-219	ENST00000542848	GH1	P01241	217 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	PARP1	P09874	1014 aa	Known RBP	13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	IQCF3	P0C7M6	154 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	MYOG	P15173	224 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	QRICH1	Q2TAL8	776 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	TMEM67	Q5HYA8	995 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	PPP2R2D	Q66LE6	453 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	SEPT14	Q6ZU15	432 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	FBXO11	Q86XK2	927 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	PHOSPHO2	Q8TCD6	241 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	RMDN3	Q96TC7	470 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	JMJD4	Q9H9V9	463 aa		13.84	□□□□□ -0.19
PTPN6-219	ENST00000542848	DOCK5	Q9H7D0	1870 aa		13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	EIF3J	O75822	258 aa	Known RBP	13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	MMP3	P08254	477 aa		13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	CAST	P20810	708 aa	Known RBP	13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	ARHGAP1	Q07960	439 aa		13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	CCDC85B	Q15834	202 aa	Predicted RBP	13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	PTGIS	Q16647	500 aa		13.83	□□□□□ -0.2
PTPN6-219	ENST00000542848	LY6K	Q17RY6	165 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms