RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 LCTP09848 1927 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 GOLGA8AA7E2F4 631 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 GOLGA8BA8MQT2 603 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 GCOM1H8Y6P7 765 aaPredicted RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 ADAMTS3O15072 1205 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 RGS20O76081 388 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 ARIH2O95376 493 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 POLR2MP0CAP2 368 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 EIF2AK2P19525 551 aaKnown RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 ATN1P54259 1190 aaPredicted RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 GJA9P57773 515 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 NKX3-2P78367 333 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 FGD1P98174 961 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 BEX3Q00994 111 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 PDE4DQ08499 809 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 NTRK3Q16288 839 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 USP17L6PQ6QN14 398 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 FCHSD1Q86WN1 690 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 IL31RAQ8NI17 732 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 NSUN6Q8TEA1 469 aaKnown RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 COPS5Q92905 334 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 GPKOWQ92917 476 aaPredicted RBP eCLIP11.25□□□□□ -0.61
YBX3-212ENST00000542002 HTATIP2Q9BUP3 242 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 WDR11Q9BZH6 1224 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 UPF3AQ9H1J1 476 aaKnown RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 NCOA5Q9HCD5 579 aaKnown RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 VTA1Q9NP79 307 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 RBM28Q9NW13 759 aaKnown RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 NAP1L2Q9ULW6 460 aaPredicted RBP11.25□□□□□ -0.61
YBX3-212ENST00000542002 PHF24Q9UPV7 400 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 CNTNAP5Q8WYK1 1306 aa11.25□□□□□ -0.61
YBX3-212ENST00000542002 LOC102724159A0A0B4J2E5 919 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 DYNC1LI2O43237 492 aaPredicted RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 DTNBO60941 627 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 NR3C2P08235 984 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 METAP2P50579 478 aaKnown RBP eCLIP11.24□□□□□ -0.613e-11■■■□□ 14.6
YBX3-212ENST00000542002 ACLYP53396 1101 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 RCAN1P53805 252 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 CCT2P78371 535 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 PWP2Q15269 919 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 PKN1Q16512 942 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 DUSP28Q4G0W2 176 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 ARHGEF16Q5VV41 709 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 WWC2Q6AWC2 1192 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 CCDC62Q6P9F0 684 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 SLC39A5Q6ZMH5 540 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 NOL8Q76FK4 1167 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 RNF180Q86T96 592 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 VSIG10LQ86VR7 867 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 IWS1Q96ST2 819 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 PDRG1Q9NUG6 133 aa11.24□□□□□ -0.61
YBX3-212ENST00000542002 MAP3K20Q9NYL2 800 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 SEC63Q9UGP8 760 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 BAZ2BQ9UIF8 2168 aaKnown RBP11.24□□□□□ -0.61
YBX3-212ENST00000542002 KBTBD13C9JR72 458 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 PIK3CDO00329 1044 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 EVI5O60447 810 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 C6orf222P0C671 652 aaPredicted RBP11.23□□□□□ -0.61
YBX3-212ENST00000542002 CST5P28325 142 aaPredicted RBP11.23□□□□□ -0.61
YBX3-212ENST00000542002 ANAPC15P60006 121 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 MRPS9P82933 396 aaKnown RBP11.23□□□□□ -0.61
YBX3-212ENST00000542002 PGM5Q15124 567 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 STXBP2Q15833 593 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 LY6KQ17RY6 165 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 GNASQ5JWF2 1037 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 SEPT14Q6ZU15 432 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 HEATR3Q7Z4Q2 680 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 TLK2Q86UE8 772 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 C7orf61Q8IZ16 206 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 SAMD3Q8N6K7 520 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 PHKBQ93100 1093 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 KIF2CQ99661 725 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 PDCD2LQ9BRP1 358 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 ALDH8A1Q9H2A2 487 aaPredicted RBP11.23□□□□□ -0.61
YBX3-212ENST00000542002 BCAS3Q9H6U6 928 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 PSTPIP2Q9H939 334 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 NID2Q14112 1375 aa11.23□□□□□ -0.61
YBX3-212ENST00000542002 A0A1W2PQ45 241 aaPredicted RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 A0A1W2PQY0 241 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 STXBP3O00186 592 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 GRIN2DO15399 1336 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 EIF3JO75822 258 aaKnown RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 ASGR1P07306 291 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 MYCLP12524 364 aaPredicted RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 SYN1P17600 705 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 SP2Q02086 613 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 TRAF1Q13077 416 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 SNX17Q15036 470 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 UBE2SQ16763 222 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 PRPF38BQ5VTL8 546 aaKnown RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 ZNF274Q96GC6 653 aaPredicted RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 TSEN34Q9BSV6 310 aaKnown RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 DDX41Q9UJV9 622 aaKnown RBP11.22□□□□□ -0.61
YBX3-212ENST00000542002 TPCN1Q9ULQ1 816 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 Q9Y3F1 56 aa11.22□□□□□ -0.61
YBX3-212ENST00000542002 FRMPD4Q14CM0 1322 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 PRPF3O43395 683 aaKnown RBP11.21□□□□□ -0.61
YBX3-212ENST00000542002 TXNP10599 105 aaKnown RBP11.21□□□□□ -0.61
YBX3-212ENST00000542002 AK2P54819 239 aa11.21□□□□□ -0.61
YBX3-212ENST00000542002 RTP1P59025 263 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms