RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 NECAB3Q96P71 396 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 ASB2Q96Q27 587 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 MTIF3Q9H2K0 278 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 CERS4Q9HA82 394 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 TRIP12Q14669 1992 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 WDR19Q8NEZ3 1342 aa18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 PRRC2BQ5JSZ5 2229 aaKnown RBP18.18■□□□□ 0.5
CLSTN3-213ENST00000541953 KIAA1217Q5T5P2 1943 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 A6NJR5 290 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 CA3P07451 260 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 ATP2A2P16615 1042 aaKnown RBP18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 TFF2Q03403 129 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 SEZ6LQ9BYH1 1024 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 PCDHA11Q9Y5I1 949 aa18.17■□□□□ 0.5
CLSTN3-213ENST00000541953 MYH6P13533 1939 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 LOC102724159A0A0B4J2E5 919 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 GPNMBQ14956 572 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 PWP2Q15269 919 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 CCDC62Q6P9F0 684 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 MFSD6Q6ZSS7 791 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 RPUSD2Q8IZ73 545 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 ADAMTS19Q8TE59 1207 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 SCFD2Q8WU76 684 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 ATXN2LQ8WWM7 1075 aaKnown RBP18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 RILPL2Q969X0 211 aa18.16■□□□□ 0.5
CLSTN3-213ENST00000541953 TRIM6-TRIM34B2RNG4 842 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 IQCF3P0C7M6 154 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 TXNP10599 105 aaKnown RBP18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 CHMP4BP1P59074 171 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 ARHGAP1Q07960 439 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 CDC37Q16543 378 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 TCTN1Q2MV58 587 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 B4GALNT3Q6L9W6 998 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 TMCO2Q7Z6W1 182 aaPredicted RBP18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 TAAR1Q96RJ0 339 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 IL25Q9H293 177 aa18.15■□□□□ 0.5
CLSTN3-213ENST00000541953 NCOR1O75376 2440 aa18.14■□□□□ 0.5
CLSTN3-213ENST00000541953 KDM4AO75164 1064 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 SDSP20132 328 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 LY6KQ17RY6 165 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 NFRKBQ6P4R8 1299 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 DNERQ8NFT8 737 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 SYTL5Q8TDW5 730 aaPredicted RBP18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 AFG1LQ8WV93 481 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 DHX38Q92620 1227 aaKnown RBP18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 KAT2BQ92831 832 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 TTC14Q96N46 770 aa18.14■□□□□ 0.49
CLSTN3-213ENST00000541953 B4E1Z4 1266 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 MMP3P08254 477 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 SUPT20HL2P0C7V6 817 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 GDF6Q6KF10 455 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 SEPT14Q6ZU15 432 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 ADGRF4Q8IZF3 695 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 PNMA1Q8ND90 353 aa18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 GPHNQ9NQX3 736 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 ZBTB47Q9UFB7 747 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-213ENST00000541953 LCHNA4D1U4 455 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 PITPNM1O00562 1244 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 OPLAHO14841 1288 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 NKRFO15226 690 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 PFKMP08237 780 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 KCNQ1P51787 676 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 MRPS5P82675 430 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 TAP1Q03518 808 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 QRICH1Q2TAL8 776 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 TMEM67Q5HYA8 995 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 GPATCH4Q5T3I0 446 aaKnown RBP18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 CHST3Q7LGC8 479 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 PLEKHM2Q8IWE5 1019 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 SMC5Q8IY18 1101 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 ENAHQ8N8S7 591 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 ESR2Q92731 530 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 UHRF1Q96T88 793 aaPredicted RBP18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 MTCH2Q9Y6C9 303 aa18.12■□□□□ 0.49
CLSTN3-213ENST00000541953 IGHDP01880 384 aa18.11■□□□□ 0.49
CLSTN3-213ENST00000541953 CWC27Q6UX04 472 aaKnown RBP18.11■□□□□ 0.49
CLSTN3-213ENST00000541953 WNT8BQ93098 351 aa18.11■□□□□ 0.49
CLSTN3-213ENST00000541953 MYH7BA7E2Y1 1941 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 RAD50Q92878 1312 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 PPP1R11O60927 126 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 PCP11498 1178 aaKnown RBP18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 BMP1P13497 986 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 COL9A1P20849 921 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 DEFB103AP81534 67 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 HIC1Q14526 733 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 PTGISQ16647 500 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 SLC35G1Q2M3R5 365 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 DGKHQ86XP1 1220 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 HERC6Q8IVU3 1022 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 STAG2Q8N3U4 1231 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 RGS22Q8NE09 1264 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 ARNTL2Q8WYA1 636 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 SLC9A7Q96T83 725 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 RNF41Q9H4P4 317 aaPredicted RBP18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 JMJD4Q9H9V9 463 aa18.1■□□□□ 0.49
CLSTN3-213ENST00000541953 ABCB11O95342 1321 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 ZNF213O14771 459 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 SORBS3O60504 671 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 LPXNO60711 386 aa18.09■□□□□ 0.49
CLSTN3-213ENST00000541953 EIF2AK2P19525 551 aaKnown RBP18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms