RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 INF2Q27J81 1249 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 WWC2Q6AWC2 1192 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 POMZP3Q6PJE2 187 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 C6orf15Q6UXA7 325 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-213ENST00000539950 NLGN1Q8N2Q7 840 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 PLEKHO2Q8TD55 490 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 ZNF526Q8TF50 670 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-213ENST00000539950 DPF3Q92784 378 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 PEX11GQ96HA9 241 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS13A-213ENST00000539950 PMF1-BGLAPU3KQ54 211 aa5.94□□□□□ -1.46
VPS13A-213ENST00000539950 B2RBV5 119 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 NOP56O00567 594 aaKnown RBP5.93□□□□□ -1.46
VPS13A-213ENST00000539950 SLURP1P55000 103 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 DLX2Q07687 328 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-213ENST00000539950 B3GNT8Q7Z7M8 397 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 SAPCD2Q86UD0 394 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 CRACR2BQ8N4Y2 399 aaPredicted RBP5.93□□□□□ -1.46
VPS13A-213ENST00000539950 FRS2Q8WU20 508 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 MMP19Q99542 508 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 KRTAP9-3Q9BYQ3 159 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 NKX2-4Q9H2Z4 354 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 CAPN10Q9HC96 672 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 NUDT5Q9UKK9 219 aa5.93□□□□□ -1.46
VPS13A-213ENST00000539950 ZBTB7AO95365 584 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 NAT2P11245 290 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 SYN1P17600 705 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 ERCC5P28715 1186 aaPredicted RBP5.92□□□□□ -1.46
VPS13A-213ENST00000539950 KCNC1P48547 511 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 SLC9A5Q14940 896 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 LCE5AQ5TCM9 118 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 LARP1BQ659C4 914 aaKnown RBP5.92□□□□□ -1.46
VPS13A-213ENST00000539950 LIPIQ6XZB0 460 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 SMARCC2Q8TAQ2 1214 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 NPLOC4Q8TAT6 608 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 CXorf38Q8TB03 319 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 NOX5Q96PH1 765 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 KRTAP4-5Q9BYR2 181 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 CYP26B1Q9NR63 512 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 BTG4Q9NY30 223 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 ACTR10Q9NZ32 417 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 MARCH2Q9P0N8 246 aa5.92□□□□□ -1.46
VPS13A-213ENST00000539950 SH3D21A4FU49 640 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 ARNTLO00327 626 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 CACNB2Q08289 660 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-213ENST00000539950 SKOR2Q2VWA4 1001 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-213ENST00000539950 TEX2Q8IWB9 1127 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 FAM178BQ8IXR5 827 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 MICAL1Q8TDZ2 1067 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 BTN2A2Q8WVV5 523 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 CPA5Q8WXQ8 436 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 SPATA25Q9BR10 227 aa5.91□□□□□ -1.46
VPS13A-213ENST00000539950 SSBP05455 408 aaKnown RBP eCLIP5.9□□□□□ -1.46
VPS13A-213ENST00000539950 ITGAVP06756 1048 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 ETFBP38117 255 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 SF1Q15637 639 aaKnown RBP5.9□□□□□ -1.46
VPS13A-213ENST00000539950 SV2CQ496J9 727 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 MRM1Q6IN84 353 aaKnown RBP5.9□□□□□ -1.46
VPS13A-213ENST00000539950 FRMD5Q7Z6J6 570 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 ZNF227Q86WZ6 799 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 CCDC103Q8IW40 242 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 DDX11Q96FC9 970 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 TEPSINQ96N21 525 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 SYT3Q9BQG1 590 aa5.9□□□□□ -1.46
VPS13A-213ENST00000539950 TMEFF2Q9UIK5 374 aaPredicted RBP5.9□□□□□ -1.46
VPS13A-213ENST00000539950 C22orf46C9J442 243 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 SGSM2O43147 1006 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 PRICKLE3O43900 615 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-213ENST00000539950 SUSD5O60279 629 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 FPR2P25090 351 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 TNNI3KQ59H18 835 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 VPS37DQ86XT2 251 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 SPATA6Q9NWH7 488 aaPredicted RBP5.89□□□□□ -1.47
VPS13A-213ENST00000539950 PRKAG3Q9UGI9 489 aa5.89□□□□□ -1.47
VPS13A-213ENST00000539950 C8BP07358 591 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 ECI1P42126 302 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 PRSS53Q2L4Q9 553 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 NT5DC1Q5TFE4 455 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 DCP2Q8IU60 420 aaKnown RBP5.88□□□□□ -1.47
VPS13A-213ENST00000539950 CARFQ8N187 725 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 KREMEN2Q8NCW0 462 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 ZNF428Q96B54 188 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 ZBTB8AQ96BR9 441 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS13A-213ENST00000539950 LRP2BPQ9P2M1 347 aa5.88□□□□□ -1.47
VPS13A-213ENST00000539950 DDAH1O94760 285 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 SNRPB2P08579 225 aaKnown RBP5.87□□□□□ -1.47
VPS13A-213ENST00000539950 FGRP09769 529 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 CYP2C8P10632 490 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 TCF3P15923 654 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 HOXC12P31275 282 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 SMAD4Q13485 552 aaKnown RBP5.87□□□□□ -1.47
VPS13A-213ENST00000539950 RTP5Q14D33 572 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 E4F1Q66K89 784 aaPredicted RBP5.87□□□□□ -1.47
VPS13A-213ENST00000539950 NLRP10Q86W26 655 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 FAM26EQ8N5C1 309 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 AP5M1Q9H0R1 490 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 ZNF408Q9H9D4 720 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 FBXL7Q9UJT9 491 aa5.87□□□□□ -1.47
VPS13A-213ENST00000539950 TIMM13Q9Y5L4 95 aaPredicted RBP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms