RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 CCDC24Q8N4L8 307 aa22.57■■□□□ 1.2
TMEM260-203ENST00000539559 SLC44A5Q8NCS7 719 aa22.57■■□□□ 1.2
TMEM260-203ENST00000539559 SEMA6BQ9H3T3 888 aa22.57■■□□□ 1.2
TMEM260-203ENST00000539559 MINPP1Q9UNW1 487 aa22.57■■□□□ 1.2
TMEM260-203ENST00000539559 BUB1O43683 1085 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 LIG3P49916 1009 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 KIAA0895Q8NCT3 520 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 OSBPL9Q96SU4 736 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 NUP58Q9BVL2 599 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 CRNKL1Q9BZJ0 848 aaKnown RBP22.56■■□□□ 1.2
TMEM260-203ENST00000539559 DEF6Q9H4E7 631 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 CCNT1O60563 726 aaKnown RBP22.56■■□□□ 1.2
TMEM260-203ENST00000539559 KIF11P52732 1056 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 GNGT1P63211 74 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 CCSER1Q9C0I3 900 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 SH2D4AQ9H788 454 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 A0A1B0GUL6 1792 aa22.56■■□□□ 1.2
TMEM260-203ENST00000539559 KCTD16Q68DU8 428 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 ZNF662Q6ZS27 426 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 NBPF5PQ86XG9 351 aaPredicted RBP22.55■■□□□ 1.2
TMEM260-203ENST00000539559 SH2D3CQ8N5H7 860 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 BCAS4Q8TDM0 211 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 ARHGEF1Q92888 912 aaKnown RBP22.55■■□□□ 1.2
TMEM260-203ENST00000539559 MAD2L2Q9UI95 211 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 JRKLQ9Y4A0 524 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 ZSCAN5CA6NGD5 496 aaPredicted RBP22.55■■□□□ 1.2
TMEM260-203ENST00000539559 TACC1O75410 805 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 SLC51AQ86UW1 340 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 PPM1EQ8WY54 764 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 DLEC1Q9Y238 1755 aa22.55■■□□□ 1.2
TMEM260-203ENST00000539559 AKR1B10O60218 316 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 SHOX2O60902 331 aaPredicted RBP22.54■■□□□ 1.2
TMEM260-203ENST00000539559 RRAGAQ7L523 313 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 CAPS2Q9BXY5 557 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 ESYT3A0FGR9 886 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 TPTE2Q6XPS3 522 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 DYMQ7RTS9 669 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 TRIM58Q8NG06 486 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 QTRT2Q9H974 415 aaKnown RBP22.54■■□□□ 1.2
TMEM260-203ENST00000539559 BSDC1Q9NW68 430 aaPredicted RBP22.54■■□□□ 1.2
TMEM260-203ENST00000539559 STX8Q9UNK0 236 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 LRRC53A6NM62 1247 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 STXBP3O00186 592 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 GFPT1Q06210 699 aaPredicted RBP22.54■■□□□ 1.2
TMEM260-203ENST00000539559 UBE4AQ14139 1066 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 TTMPQ5BVD1 217 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 CCDC181Q5TID7 509 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 MMGT1Q8N4V1 131 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 RETREG2Q8NC44 543 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 RBM12Q9NTZ6 932 aaKnown RBP22.54■■□□□ 1.2
TMEM260-203ENST00000539559 TCP11L1Q9NUJ3 509 aa22.54■■□□□ 1.2
TMEM260-203ENST00000539559 USO1O60763 962 aaKnown RBP22.53■■□□□ 1.2
TMEM260-203ENST00000539559 ATP1A2P50993 1020 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 RASSF7Q02833 373 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 HAUS3Q68CZ6 603 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 CCDC70Q6NSX1 233 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 TADA2BQ86TJ2 420 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 GLIS3Q8NEA6 775 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 NOC3LQ8WTT2 800 aaKnown RBP22.53■■□□□ 1.2
TMEM260-203ENST00000539559 NLRP3Q96P20 1036 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 GRIN2DO15399 1336 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 BICDL2A1A5D9 508 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 LY75O60449 1722 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 PCP11498 1178 aaKnown RBP22.53■■□□□ 1.2
TMEM260-203ENST00000539559 RFC4P35249 363 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 NAP1L1P55209 391 aaKnown RBP22.53■■□□□ 1.2
TMEM260-203ENST00000539559 RNASE9P60153 205 aaKnown RBP22.53■■□□□ 1.2
TMEM260-203ENST00000539559 ICE2Q659A1 982 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 IQCEQ6IPM2 695 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 ERGIC2Q96RQ1 377 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 PLAGL2Q9UPG8 496 aa22.53■■□□□ 1.2
TMEM260-203ENST00000539559 PDCLQ13371 301 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 TRAPPC3LQ5T215 181 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 AMIGO3Q86WK7 504 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 MTMR8Q96EF0 704 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 VAT1LQ9HCJ6 419 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 KRT14P02533 472 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 GTF2A1P52655 376 aaPredicted RBP22.52■■□□□ 1.2
TMEM260-203ENST00000539559 TXNRD3Q86VQ6 643 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 AMOTL1Q8IY63 956 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 KAT2BQ92831 832 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 NDST4Q9H3R1 872 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 SIK3Q9Y2K2 1263 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 FAM169AQ9Y6X4 670 aa22.52■■□□□ 1.2
TMEM260-203ENST00000539559 OR52Z1P0C646 297 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 PPFIA1Q13136 1202 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 LRRC41Q15345 812 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 ZSCAN29Q8IWY8 852 aaPredicted RBP22.51■■□□□ 1.19
TMEM260-203ENST00000539559 EFCAB13Q8IY85 973 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 MMTAG2Q9BU76 263 aaKnown RBP22.51■■□□□ 1.19
TMEM260-203ENST00000539559 TSGA10Q9BZW7 698 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 SBF2Q86WG5 1849 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 MAGEA1P43355 309 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 VWA3BQ502W6 1294 aa22.51■■□□□ 1.19
TMEM260-203ENST00000539559 FAM153BP0C7A2 387 aa22.5■■□□□ 1.19
TMEM260-203ENST00000539559 SLC1A4P43007 532 aa22.5■■□□□ 1.19
TMEM260-203ENST00000539559 APBA1Q02410 837 aa22.5■■□□□ 1.19
TMEM260-203ENST00000539559 FAM153CQ494X1 144 aa22.5■■□□□ 1.19
TMEM260-203ENST00000539559 FAM114A1Q8IWE2 563 aa22.5■■□□□ 1.19
TMEM260-203ENST00000539559 MKNK2Q9HBH9 465 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms